Aniseed - Gene card

Gene Card

Best human hits

GOT1; GOT1L1; GOT2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004586

Gene Model ID

KH2012:KH.C2.393

Location

KhC2:5115559..5120369

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000003669
NCBI Reference Sequence	XM_002126065.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad018a01

Plate: R1CiGC02l08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
PyrdxlP-dep_Trfase	SUPERFAMILY	Pyridoxal phosphate-dependent transferase
Aminotransferase_I/II	Pfam	Aminotransferase, class I/classII
Asp_trans	PRINTS	Aspartate/other aminotransferase
PyrdxlP-dep_Trfase_major	Gene3D	Pyridoxal phosphate-dependent transferase, major domain
NHTrfase_class1_PyrdxlP-BS	ProSitePatterns	Aminotransferases, class-I, pyridoxal-phosphate-binding site
PyrdxlP-dep_Trfase_dom1	Gene3D	Pyridoxal phosphate-dependent transferase domain 1
Asp_trans	PANTHER	Aspartate/other aminotransferase

GOSlim

35 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
catalytic activity	Orthology	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
lysosome	Blast	cellular component
cytosol	Blast	cellular component
plasma membrane	Orthology	cellular component
biosynthetic process	Orthology	biological process
cell surface	Orthology	cellular component
membrane	Orthology	cellular component
transferase activity	Orthology	molecular function
enzyme binding	Orthology	molecular function
protein homodimerization activity	Orthology	molecular function
myelin sheath	Orthology	cellular component
extracellular exosome	Orthology	cellular component
anion binding	Orthology	molecular function
cellular metabolic process	Orthology	biological process
organic substance metabolic process	Orthology	biological process
cellular biosynthetic process	Orthology	biological process
organic substance transport	Orthology	biological process
ion transport	Orthology	biological process
cellular aromatic compound metabolic process	Orthology	biological process
small molecule binding	Orthology	molecular function
heterocyclic compound binding	Orthology	molecular function
organic cyclic compound binding	Orthology	molecular function
coenzyme binding	Orthology	molecular function
neuronal cell body	Orthology	cellular component
response to organic substance	Orthology	biological process
cell projection part	Blast	cellular component
axon	Blast	cellular component
synapse part	Blast	cellular component

GO (Orthology)

37 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
catalytic activity	Hs	molecular function
L-aspartate:2-oxoglutarate aminotransferase activity	Hs	molecular function
phospholipid binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial matrix	Hs	cellular component
plasma membrane	Hs	cellular component
gluconeogenesis	Hs	biological process
2-oxoglutarate metabolic process	Hs	biological process
oxaloacetate metabolic process	Hs	biological process
cellular amino acid metabolic process	Hs	biological process
aspartate metabolic process	Hs	biological process
aspartate biosynthetic process	Hs	biological process
aspartate catabolic process	Hs	biological process
glutamate metabolic process	Hs	biological process
lipid transport	Hs	biological process
transaminase activity	Hs	molecular function
cellular amino acid biosynthetic process	Hs	biological process
biosynthetic process	Hs	biological process
cell surface	Hs	cellular component
fatty acid transport	Hs	biological process
membrane	Hs	cellular component
kynurenine-oxoglutarate transaminase activity	Hs	molecular function
amino acid binding	Hs	molecular function
transferase activity	Hs	molecular function
enzyme binding	Hs	molecular function
pyridoxal phosphate binding	Hs	molecular function
carboxylic acid binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
perikaryon	Hs	cellular component
myelin sheath	Hs	cellular component
response to ethanol	Hs	biological process
glyoxylate metabolic process	Hs	biological process
4-hydroxyglutamate transaminase activity	Hs	molecular function
extracellular exosome	Hs	cellular component
L-kynurenine metabolic process	Hs	biological process

GO (Blast)

30 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	605	0.0
catalytic activity	Hs	molecular function	605	0.0
L-aspartate:2-oxoglutarate aminotransferase activity	Hs	molecular function	605	0.0
phosphatidylserine decarboxylase activity	Hs	molecular function	380	4.96e-130
phospholipid binding	Hs	molecular function	605	0.0
nucleus	Hs	cellular component	380	4.96e-130
nucleoplasm	Hs	cellular component	380	4.96e-130
cytoplasm	Hs	cellular component	380	4.96e-130
mitochondrion	Hs	cellular component	605	0.0
mitochondrial inner membrane	Hs	cellular component	605	0.0
mitochondrial matrix	Hs	cellular component	605	0.0
lysosome	Hs	cellular component	380	4.96e-130
cytosol	Hs	cellular component	380	4.96e-130
plasma membrane	Hs	cellular component	605	0.0
transaminase activity	Hs	molecular function	605	0.0
cell surface	Hs	cellular component	605	0.0
membrane	Hs	cellular component	605	0.0
kynurenine-oxoglutarate transaminase activity	Hs	molecular function	605	0.0
amino acid binding	Hs	molecular function	605	0.0
transferase activity	Hs	molecular function	605	0.0
enzyme binding	Hs	molecular function	605	0.0
pyridoxal phosphate binding	Hs	molecular function	605	0.0
carboxylic acid binding	Hs	molecular function	605	0.0
protein homodimerization activity	Hs	molecular function	605	0.0
perikaryon	Hs	cellular component	605	0.0
myelin sheath	Hs	cellular component	605	0.0
axon terminus	Hs	cellular component	380	4.96e-130
4-hydroxyglutamate transaminase activity	Hs	molecular function	605	0.0
L-cysteine:2-oxoglutarate aminotransferase activity	Hs	molecular function	380	4.96e-130
extracellular exosome	Hs	cellular component	605	0.0

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
catalytic activity	Gene3D	molecular function	9.2E-174
cellular amino acid metabolic process	PANTHER	biological process	2.4E-219
transaminase activity	PANTHER	molecular function	2.4E-219
biosynthetic process	Pfam	biological process	8.0E-90
pyridoxal phosphate binding	Pfam	molecular function	8.0E-90