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Gene Card

Best human hits

POU4F1; POU4F2; POU4F3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004616

Gene Model ID

KH2012:KH.C2.42

Location

KhC2:2301663..2304442

Transcript Models and Sequences

  KH2012:KH.C2.42.v1.A.SL1-1
KH2012:KH.C2.42.v2.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000004922
NCBI Reference Sequence NM_001032800.1
NCBI Reference Sequence XM_009859203.2
Collections

Gene collection 1 (N. Satoh)

1 result

citb034g05

Plate: R1CiGC32g05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
POU_dom Pfam POU-specific domain
POU_dom ProSitePatterns POU-specific domain
Cro/C1-type_HTH CDD Cro/C1-type helix-turn-helix domain
Lambda_DNA-bd_dom_sf SUPERFAMILY Lambda repressor-like, DNA-binding domain superfamily
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_dom CDD Homeobox domain
POU_dom ProSiteProfiles POU-specific domain
POU PRINTS POU domain
Homeobox_dom Pfam Homeobox domain
POU_dom SMART POU-specific domain
Homeobox_dom SMART Homeobox domain

GOSlim

21 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
transcription corepressor activity Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
plasma membrane Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
membrane Blast cellular component
nuclear speck Blast cellular component
neuron projection Blast cellular component
sequence-specific DNA binding Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 276 1.78e-89
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 280 1.08e-91
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 276 1.78e-89
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 280 1.08e-91
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 280 1.08e-91
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 278 4.45e-90
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 276 1.78e-89
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 280 1.08e-91
DNA binding Hs molecular function 280 1.08e-91
chromatin binding Hs molecular function 278 4.45e-90
single-stranded DNA binding Hs molecular function 276 1.78e-89
transcription factor activity, sequence-specific DNA binding Hs molecular function 280 1.08e-91
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 276 1.78e-89
transcription coactivator activity Hs molecular function 278 4.45e-90
transcription corepressor activity Hs molecular function 278 4.45e-90
nucleus Hs cellular component 280 1.08e-91
nucleoplasm Hs cellular component 280 1.08e-91
cytoplasm Hs cellular component 280 1.08e-91
plasma membrane Hs cellular component 278 4.45e-90
membrane Hs cellular component 278 4.45e-90
nuclear speck Hs cellular component 278 4.45e-90
neuron projection Hs cellular component 276 1.78e-89
sequence-specific DNA binding Hs molecular function 280 1.08e-91
GTPase binding Hs molecular function 276 1.78e-89
promoter-specific chromatin binding Hs molecular function 278 4.45e-90

GO (InterProScan)

4 results

GO Term Analysis Type e-value
DNA binding PRINTS molecular function 2.9E-34
transcription factor activity, sequence-specific DNA binding SMART molecular function 1.1E-48
regulation of transcription, DNA-templated SMART biological process 1.1E-48
sequence-specific DNA binding CDD molecular function 0.00723342

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