Aniseed - Gene card

Gene Card

Best human hits

BMP2; BMP3; GDF6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004618

Gene Model ID

KH2012:KH.C2.421

Location

KhC2:1977432..1997449

Transcript Models and Sequences

KH2012:KH.C2.421.v1.A.nonSL4-1
KH2012:KH.C2.421.v1.A.nonSL6-1
KH2012:KH.C2.421.v1.A.nonSL7-1
KH2012:KH.C2.421.v1.A.nonSL8-1
KH2012:KH.C2.421.v2.A.SL3-2
KH2012:KH.C2.421.v2.A.SL5-2
KH2012:KH.C2.421.v3.A.ND1-1
KH2012:KH.C2.421.v4.A.ND2-2

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000004054
ENSEMBL	ENSCING00000004058
ENSEMBL	ENSCING00000011558
NCBI Reference Sequence	NM_001078517.1
NCBI Reference Sequence	XM_018816761.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cilv010d12

Plate: R1CiGC25f02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

6 results

Ci-ADMP -667/-252 REG00000332 [ regulatory_region (extended_promoter) ]

Cirobu.REG.KH2012.C2:1981663-1982969|Admp REG00001125 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.C2:1982040-1982969|Admp REG00001126 [ regulatory_region (extended_promoter) ]
  - Cirobu.REG.KH2012.C2:1982340-1982969|Admp REG00001127 [ regulatory_region (extended_promoter) ]
    - Cirobu.REG.KH2012.C2:1982640-1982969|Admp REG00001128 [ regulatory_region (extended_promoter) ]
      - Cirobu.REG.KH2012.C2:1982840-1982969|Admp REG00001129 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term	Analysis	Definition
TGF-beta-rel	PANTHER	Transforming growth factor-beta-related
TGF-b_C	ProSiteProfiles	Transforming growth factor-beta, C-terminal
TGF-b_C	SMART	Transforming growth factor-beta, C-terminal
Cystine-knot_cytokine	Gene3D	Cystine-knot cytokine
TGFb_CS	ProSitePatterns	Transforming growth factor beta, conserved site
TGF-b_propeptide	Pfam	TGF-beta, propeptide
Cystine-knot_cytokine	SUPERFAMILY	Cystine-knot cytokine
TGF-b_C	Pfam	Transforming growth factor-beta, C-terminal
Prot_kinase_dom	SMART	Protein kinase domain
Protein_kinase_ATP_BS	ProSitePatterns	Protein kinase, ATP binding site
Ser/Thr_kinase_AS	ProSitePatterns	Serine/threonine-protein kinase, active site
Prot_kinase_dom	ProSiteProfiles	Protein kinase domain
Kinase-like_dom_sf	SUPERFAMILY	Protein kinase-like domain superfamily
Prot_kinase_dom	Pfam	Protein kinase domain

GOSlim

23 results

GO Term	Annotation Origin	Type
receptor binding	Blast	molecular function
protein binding	Blast	molecular function
extracellular region	Blast	cellular component
extracellular space	Blast	cellular component
protein phosphorylation	InterProScan	biological process
cell surface	Blast	cellular component
protein homodimerization activity	Blast	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
protein heterodimerization activity	Blast	molecular function
oxidation-reduction process	Blast	biological process
extracellular exosome	Blast	cellular component
protein kinase activity	InterProScan	molecular function
ATP binding	InterProScan	molecular function
catalytic activity	Blast	molecular function
molecular function regulator	Blast	molecular function
regulation of signal transduction	Blast	biological process
signaling receptor activity	Blast	molecular function
dephosphorylation	Blast	biological process
hydrolase activity	Blast	molecular function
enzyme binding	Blast	molecular function
enzyme activator activity	Blast	molecular function
integral component of plasma membrane	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
retinol dehydrogenase activity	Hs	molecular function	120	7.47e-30
receptor binding	Hs	molecular function	126	2.99e-31
cytokine activity	Hs	molecular function	126	2.99e-31
transforming growth factor beta receptor binding	Hs	molecular function	126	2.99e-31
protein binding	Hs	molecular function	120	7.47e-30
extracellular region	Hs	cellular component	126	2.99e-31
extracellular space	Hs	cellular component	126	2.99e-31
growth factor activity	Hs	molecular function	126	2.99e-31
cell surface	Hs	cellular component	120	7.47e-30
phosphatase activator activity	Hs	molecular function	120	7.47e-30
co-receptor binding	Hs	molecular function	120	7.47e-30
protein homodimerization activity	Hs	molecular function	120	2.28e-29
intracellular membrane-bounded organelle	Hs	cellular component	120	7.47e-30
SMAD binding	Hs	molecular function	120	7.47e-30
protein heterodimerization activity	Hs	molecular function	120	7.47e-30
extracellular exosome	Hs	cellular component	126	2.99e-31
BMP receptor binding	Hs	molecular function	126	2.99e-31
BMP receptor complex	Hs	cellular component	120	7.47e-30

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
protein phosphorylation	SMART	biological process	6.4E-88
growth factor activity	SMART	molecular function	3.4E-54
protein kinase activity	SMART	molecular function	6.4E-88
ATP binding	SMART	molecular function	6.4E-88