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GENE CARD

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Gene Card

Best human hits

PRICKLE1; PRICKLE2; TES

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004619

Gene Model ID

KH2012:KH.C2.422

Location

KhC2:3332584..3339487

Transcript Models and Sequences

  KH2012:KH.C2.422.v1.A.SL1-1
KH2012:KH.C2.422.v1.A.SL2-1
KH2012:KH.C2.422.v1.A.SL4-1
KH2012:KH.C2.422.v1.A.SL5-1
KH2012:KH.C2.422.v1.R.ND3-1
KH2012:KH.C2.422.v2.A.SL1-1
KH2012:KH.C2.422.v2.A.SL2-1
KH2012:KH.C2.422.v2.A.SL4-1
KH2012:KH.C2.422.v2.A.SL5-1
KH2012:KH.C2.422.v2.R.ND3-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000009484
Collections

Gateway full ORF

2 results

cima811123

Plate: VES58_F01

cima822527

Plate: VES60_N09

Gene collection 1 (N. Satoh)

1 result

citb034f07

Plate: R1CiGC32e21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Znf_LIM Pfam Zinc finger, LIM-type
Znf_LIM ProSiteProfiles Zinc finger, LIM-type
PET_domain Pfam PET domain
PET_domain ProSiteProfiles PET domain
Znf_LIM SMART Zinc finger, LIM-type
PET_testin CDD PET testin
Znf_LIM ProSitePatterns Zinc finger, LIM-type

GOSlim

23 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
focal adhesion Orthology cellular component
zinc ion binding Orthology molecular function
negative regulation of cell proliferation Orthology biological process
membrane Blast cellular component
cell junction Orthology cellular component
nuclear membrane Blast cellular component
macromolecular complex Orthology cellular component
regulation of cell proliferation Orthology biological process
metal ion binding Orthology molecular function
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription corepressor activity Orthology molecular function
extracellular space Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
cell adhesion molecule binding Orthology molecular function
extracellular region part Orthology cellular component

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
focal adhesion Hs cellular component
zinc ion binding Hs molecular function
negative regulation of cell proliferation Hs biological process
cell junction Hs cellular component
macromolecular complex Hs cellular component
regulation of cell proliferation Hs biological process
cadherin binding Hs molecular function
metal ion binding Hs molecular function
negative regulation of transcription from RNA polymerase II promoter Hs biological process
transcription corepressor activity Hs molecular function
extracellular space Hs cellular component
nucleoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
extracellular matrix Hs cellular component

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 302 1.76e-97
protein binding Hs molecular function 302 1.76e-97
nucleus Hs cellular component 302 1.76e-97
cytoplasm Hs cellular component 302 1.76e-97
cytosol Hs cellular component 302 1.76e-97
plasma membrane Hs cellular component 302 1.76e-97
focal adhesion Hs cellular component 302 1.76e-97
zinc ion binding Hs molecular function 302 1.76e-97
membrane Hs cellular component 279 2.79e-84
cell junction Hs cellular component 302 1.76e-97
nuclear membrane Hs cellular component 279 2.79e-84
macromolecular complex Hs cellular component 302 1.76e-97
cadherin binding Hs molecular function 302 1.76e-97
metal ion binding Hs molecular function 302 1.76e-97

GO (InterProScan)

1 result

GO Term Analysis Type e-value
zinc ion binding Pfam molecular function 9.8E-35

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