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GENE CARD

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Gene Card

Best human hits

DDX17; DDX42; DDX5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004672

Gene Model ID

KH2012:KH.C2.471

Location

KhC2:80477..83358

Transcript Models and Sequences

  KH2012:KH.C2.471.v1.A.ND2-1
KH2012:KH.C2.471.v2.A.nonSL10-1
KH2012:KH.C2.471.v2.A.nonSL11-1
KH2012:KH.C2.471.v2.A.nonSL12-1
KH2012:KH.C2.471.v2.A.nonSL13-1
KH2012:KH.C2.471.v2.A.nonSL14-1
KH2012:KH.C2.471.v2.A.nonSL15-1
KH2012:KH.C2.471.v2.A.nonSL4-1
KH2012:KH.C2.471.v2.A.nonSL5-1
KH2012:KH.C2.471.v2.A.nonSL6-1
KH2012:KH.C2.471.v2.A.nonSL7-1
KH2012:KH.C2.471.v2.A.nonSL8-1
KH2012:KH.C2.471.v2.A.nonSL9-1
KH2012:KH.C2.471.v2.A.SL1-1
KH2012:KH.C2.471.v2.A.SL16-1
KH2012:KH.C2.471.v2.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000004147
NCBI Reference Sequence XM_002130095.4
Collections

Gateway full ORF

2 results

cien99847

Plate: VES85_N21

cima868039

Plate: VES66_O05

Gene collection 1 (N. Satoh)

2 results

citb011i10

Plate: R1CiGC30c12

cilv035k21

Plate: R1CiGC27p02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_C Pfam Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C ProSiteProfiles Helicase, C-terminal
RNA-helicase_DEAD-box_CS ProSitePatterns ATP-dependent RNA helicase DEAD-box, conserved site
Helicase_C SMART Helicase, C-terminal
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain

GOSlim

53 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
nucleotide binding Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
nuclear-transcribed mRNA catabolic process Orthology biological process
immune system process Orthology biological process
nucleic acid binding Orthology molecular function
transcription coactivator activity Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
calmodulin binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA processing Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
membrane Orthology cellular component
nuclear speck Orthology cellular component
hydrolase activity Orthology molecular function
enzyme binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
extracellular exosome Orthology cellular component
regulation of gene expression Orthology biological process
animal organ development Orthology biological process
cell differentiation Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
mRNA metabolic process Orthology biological process
RNA metabolic process Orthology biological process
cellular process Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
signal transduction Orthology biological process
response to lipid Orthology biological process
negative regulation of gene expression Orthology biological process
macromolecular complex binding Orthology molecular function
anatomical structure development Orthology biological process
receptor binding Orthology molecular function
transcription factor binding Orthology molecular function
defense response Orthology biological process
regulation of signal transduction Orthology biological process
intracellular Orthology cellular component
intracellular signal transduction Orthology biological process
apoptotic process Orthology biological process
chromatin binding Orthology molecular function
nuclear body Blast cellular component

GO (Orthology)

65 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
nucleotide binding Hs molecular function
alternative mRNA splicing, via spliceosome Hs biological process
regulation of alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
nuclear-transcribed mRNA catabolic process Hs biological process
epithelial to mesenchymal transition Hs biological process
immune system process Hs biological process
nucleic acid binding Hs molecular function
transcription coactivator activity Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
mRNA 3'-UTR binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
calmodulin binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
rRNA processing Hs biological process
RNA processing Hs biological process
mRNA processing Hs biological process
RNA-dependent ATPase activity Hs molecular function
RNA splicing Hs biological process
mRNA transcription Hs biological process
RNA secondary structure unwinding Hs biological process
miRNA metabolic process Hs biological process
membrane Hs cellular component
cell growth Hs biological process
nuclear speck Hs cellular component
hydrolase activity Hs molecular function
enzyme binding Hs molecular function
BMP signaling pathway Hs biological process
intracellular estrogen receptor signaling pathway Hs biological process
androgen receptor signaling pathway Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
gene silencing by RNA Hs biological process
MH2 domain binding Hs molecular function
pre-mRNA binding Hs molecular function
ribonucleoprotein complex binding Hs molecular function
myoblast differentiation Hs biological process
regulation of osteoblast differentiation Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
SMAD binding Hs molecular function
calcium-dependent protein binding Hs molecular function
rhythmic process Hs biological process
androgen receptor binding Hs molecular function
defense response to virus Hs biological process
regulation of androgen receptor signaling pathway Hs biological process
extracellular exosome Hs cellular component
R-SMAD binding Hs molecular function
primary miRNA binding Hs molecular function
catalytic step 2 spliceosome Hs cellular component
SMAD protein complex Hs cellular component
intrinsic apoptotic signaling pathway by p53 class mediator Hs biological process
promoter-specific chromatin binding Hs molecular function
regulation of skeletal muscle cell differentiation Hs biological process

GO (Blast)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 669 0.0
nucleic acid binding Hs molecular function 669 0.0
transcription coactivator activity Hs molecular function 667 0.0
RNA binding Hs molecular function 669 0.0
RNA helicase activity Hs molecular function 669 0.0
mRNA 3'-UTR binding Hs molecular function 669 0.0
ATP-dependent RNA helicase activity Hs molecular function 669 0.0
helicase activity Hs molecular function 669 0.0
protein binding Hs molecular function 669 0.0
calmodulin binding Hs molecular function 669 0.0
ATP binding Hs molecular function 669 0.0
nucleus Hs cellular component 669 0.0
nucleoplasm Hs cellular component 669 0.0
spliceosomal complex Hs cellular component 669 0.0
nucleolus Hs cellular component 669 0.0
cytoplasm Hs cellular component 669 0.0
cytosol Hs cellular component 667 0.0
RNA-dependent ATPase activity Hs molecular function 667 0.0
Cajal body Hs cellular component 358 4.34e-113
membrane Hs cellular component 669 0.0
nuclear speck Hs cellular component 667 0.0
hydrolase activity Hs molecular function 669 0.0
enzyme binding Hs molecular function 669 0.0
intracellular ribonucleoprotein complex Hs cellular component 669 0.0
MH2 domain binding Hs molecular function 669 0.0
pre-mRNA binding Hs molecular function 669 0.0
ribonucleoprotein complex binding Hs molecular function 669 0.0
SMAD binding Hs molecular function 669 0.0
calcium-dependent protein binding Hs molecular function 669 0.0
androgen receptor binding Hs molecular function 669 0.0
extracellular exosome Hs cellular component 669 0.0
R-SMAD binding Hs molecular function 669 0.0
primary miRNA binding Hs molecular function 669 0.0
catalytic step 2 spliceosome Hs cellular component 669 0.0
SMAD protein complex Hs cellular component 669 0.0
promoter-specific chromatin binding Hs molecular function 669 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 6.1E-48
ATP binding Pfam molecular function 6.1E-48

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