Aniseed - Gene card

Gene Card

Best human hits

TAF11

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004691

Gene Model ID

KH2012:KH.C2.489

Location

KhC2:4045298..4046235

Transcript Models and Sequences

KH2012:KH.C2.489.v1.A.ND1-1
KH2012:KH.C2.489.v1.A.SL2-1
KH2012:KH.C2.489.v1.A.SL3-1
KH2012:KH.C2.489.v1.A.SL4-1
KH2012:KH.C2.489.v1.A.SL5-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_009859339.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg032j13

Plate: R1CiGC20h16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

1 results

Ci-GABPa -2409/-1891 REG00000274 [ regulatory_region (enhancer) ]

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Histone-fold	SUPERFAMILY	Histone-fold
TAFII28	CDD	TAFII28-like protein
TAFII28	Pfam	TAFII28-like protein
TAFII28	PANTHER	TAFII28-like protein
Histone-fold	Gene3D	Histone-fold

GOSlim

15 results

GO Term	Annotation Origin	Type
transcription coactivator activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
transcription initiation from RNA polymerase II promoter	Orthology	biological process
protein heterodimerization activity	Orthology	molecular function
protein N-terminus binding	Orthology	molecular function
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
receptor binding	Orthology	molecular function
transcription factor binding	Orthology	molecular function

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
transcription coactivator activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription factor TFIID complex	Hs	cellular component
Golgi apparatus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
snRNA transcription from RNA polymerase II promoter	Hs	biological process
vitamin D receptor binding	Hs	molecular function
thyroid hormone receptor binding	Hs	molecular function
protein heterodimerization activity	Hs	molecular function
protein N-terminus binding	Hs	molecular function
RNA polymerase II transcriptional preinitiation complex assembly	Hs	biological process

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
transcription coactivator activity	Hs	molecular function	150	2.99e-46
protein binding	Hs	molecular function	150	2.99e-46
nucleus	Hs	cellular component	150	2.99e-46
nucleoplasm	Hs	cellular component	150	2.99e-46
transcription factor TFIID complex	Hs	cellular component	150	2.99e-46
Golgi apparatus	Hs	cellular component	150	2.99e-46
vitamin D receptor binding	Hs	molecular function	150	2.99e-46
thyroid hormone receptor binding	Hs	molecular function	150	2.99e-46
protein heterodimerization activity	Hs	molecular function	150	2.99e-46
protein N-terminus binding	Hs	molecular function	150	2.99e-46

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleus	PANTHER	cellular component	4.8E-54
transcription initiation from RNA polymerase II promoter	PANTHER	biological process	4.8E-54
protein heterodimerization activity	Gene3D	molecular function	6.8E-37