Aniseed - Gene card

Gene Card

Best human hits

AP002373.1; NCBP2; NCBP2L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004715

Gene Model ID

KH2012:KH.C2.51

Location

KhC2:6110309..6112130

Transcript Models and Sequences

KH2012:KH.C2.51.v1.A.SL1-1
KH2012:KH.C2.51.v1.A.SL2-1
KH2012:KH.C2.51.v1.A.SL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000018317
NCBI Reference Sequence	XM_002127785.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb3e13

Plate: R1CiGC28n22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
NCBP2_RRM	CDD	NCBP2, RNA recognition motif
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
NCBP2	PANTHER	Nuclear cap-binding protein subunit 2

GOSlim

10 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component

GO (Orthology)

5 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA cap binding	Hs	molecular function
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
nuclear cap binding complex	Hs	cellular component
mRNA cis splicing, via spliceosome	Hs	biological process

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA cap binding	Hs	molecular function	236	1.31e-80
RNA 7-methylguanosine cap binding	Hs	molecular function	236	1.31e-80
nucleic acid binding	Hs	molecular function	236	1.31e-80
RNA binding	Hs	molecular function	236	1.31e-80
single-stranded RNA binding	Hs	molecular function	52.8	4.05e-09
mRNA binding	Hs	molecular function	236	1.31e-80
protein binding	Hs	molecular function	236	1.31e-80
nucleus	Hs	cellular component	236	1.31e-80
nucleoplasm	Hs	cellular component	236	1.31e-80
cytoplasm	Hs	cellular component	236	1.31e-80
cytosol	Hs	cellular component	236	1.31e-80
mRNA cap binding complex	Hs	cellular component	236	1.31e-80
nuclear cap binding complex	Hs	cellular component	236	1.31e-80
snRNA binding	Hs	molecular function	236	1.31e-80
RNA cap binding complex	Hs	cellular component	236	1.31e-80

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
RNA cap binding	PANTHER	molecular function	1.3E-78
nucleic acid binding	SUPERFAMILY	molecular function	3.09E-31
nuclear cap binding complex	PANTHER	cellular component	1.3E-78
mRNA cis splicing, via spliceosome	PANTHER	biological process	1.3E-78