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Gene Card

Best human hits

YTHDF1; YTHDF2; YTHDF3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004781

Gene Model ID

KH2012:KH.C2.57

Location

KhC2:153886..157256

Transcript Models and Sequences

  KH2012:KH.C2.57.v1.A.SL1-1
KH2012:KH.C2.57.v1.A.SL3-1
KH2012:KH.C2.57.v2.A.SL2-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000004166
Collections

Gateway full ORF

2 results

cien123046

Plate: VES89_E13

cien130122

Plate: VES90_J15

Gene collection 1 (N. Satoh)

2 results

cieg053l16

Plate: R1CiGC24g01

cieg028n18

Plate: R1CiGC20o15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
YTH_domain Pfam YTH domain
YTH_domain ProSiteProfiles YTH domain

GOSlim

23 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
microtubule organizing center Orthology cellular component
cytosol Orthology cellular component
cell differentiation Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
cell development Orthology biological process
gamete generation Orthology biological process
immune response Orthology biological process
macromolecular complex binding Orthology molecular function
mRNA catabolic process Orthology biological process
positive regulation of gene expression Orthology biological process
negative regulation of signal transduction Orthology biological process
Notch signaling pathway Orthology biological process
translational initiation Orthology biological process
anatomical structure morphogenesis Orthology biological process
multicellular organism development Orthology biological process
immune system process Orthology biological process
animal organ development Orthology biological process

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
P-body Hs cellular component
oocyte maturation Hs biological process
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
microtubule organizing center Hs cellular component
cytosol Hs cellular component
humoral immune response Hs biological process
cell differentiation Hs biological process
cytoplasmic ribonucleoprotein granule Hs cellular component
ribosome binding Hs molecular function
regulation of mRNA stability Hs biological process
positive regulation of translation Hs biological process
negative regulation of Notch signaling pathway Hs biological process
positive regulation of translational initiation Hs biological process
oogenesis Hs biological process
embryonic morphogenesis Hs biological process
mRNA destabilization Hs biological process
regulation of hematopoietic stem cell differentiation Hs biological process
regulation of meiotic cell cycle process involved in oocyte maturation Hs biological process
positive regulation of cap-independent translational initiation Hs biological process
N6-methyladenosine-containing RNA binding Hs molecular function

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
P-body Hs cellular component 420 2.79e-140
RNA binding Hs molecular function 420 2.79e-140
protein binding Hs molecular function 420 2.79e-140
nucleus Hs cellular component 420 2.79e-140
cytoplasm Hs cellular component 420 2.79e-140
microtubule organizing center Hs cellular component 420 2.79e-140
cytosol Hs cellular component 420 2.79e-140
cytoplasmic ribonucleoprotein granule Hs cellular component 420 2.79e-140
ribosome binding Hs molecular function 402 1.43e-133
N6-methyladenosine-containing RNA binding Hs molecular function 420 2.79e-140

GO (InterProScan)

1 result

GO Term Analysis Type e-value
RNA binding Pfam molecular function 1.4E-43

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