Aniseed - Gene card

Gene Card

Best human hits

FAXDC2; MSMO1; SC5D

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004805

Gene Model ID

KH2012:KH.C2.591

Location

KhC2:2745475..2749090

Transcript Models and Sequences

KH2012:KH.C2.591.v1.A.ND1-1
KH2012:KH.C2.591.v1.A.nonSL3-1
KH2012:KH.C2.591.v2.A.SL2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000005174
NCBI Reference Sequence	XM_002127317.3
NCBI Reference Sequence	XM_018817429.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

citb070j03

Plate: R1CiGC46a02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term	Analysis	Definition
Fatty_acid_hydroxylase	Pfam	Fatty acid hydroxylase

GOSlim

10 results

GO Term	Annotation Origin	Type
iron ion binding	Orthology	molecular function
endoplasmic reticulum	Blast	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
plasma membrane	Blast	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
intracellular membrane-bounded organelle	Blast	cellular component
oxidation-reduction process	Orthology	biological process
organic substance metabolic process	Orthology	biological process
catalytic activity	Orthology	molecular function

GO (Orthology)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
iron ion binding	Hs	molecular function
endoplasmic reticulum membrane	Hs	cellular component
lipid metabolic process	Hs	biological process
lipid biosynthetic process	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
oxidoreductase activity	Hs	molecular function
oxidation-reduction process	Hs	biological process

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
C-5 sterol desaturase activity	Hs	molecular function	47.4	4.87e-06
C-4 methylsterol oxidase activity	Hs	molecular function	106	1.02e-26
iron ion binding	Hs	molecular function	319	1.57e-108
endoplasmic reticulum	Hs	cellular component	106	1.02e-26
endoplasmic reticulum membrane	Hs	cellular component	319	1.57e-108
plasma membrane	Hs	cellular component	106	1.02e-26
membrane	Hs	cellular component	319	1.57e-108
integral component of membrane	Hs	cellular component	319	1.57e-108
oxidoreductase activity	Hs	molecular function	319	1.57e-108
intracellular membrane-bounded organelle	Hs	cellular component	47.4	4.87e-06
lathosterol oxidase activity	Hs	molecular function	47.4	4.87e-06

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
iron ion binding	Pfam	molecular function	1.8E-22
lipid biosynthetic process	Pfam	biological process	1.8E-22
oxidoreductase activity	Pfam	molecular function	1.8E-22
oxidation-reduction process	Pfam	biological process	1.8E-22