Aniseed - Gene card

Gene Card

Best human hits

OTUD7A; TNFAIP3; VCPIP1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004890

Gene Model ID

KH2012:KH.C2.669

Location

KhC2:5630979..5638057

Transcript Models and Sequences

KH2012:KH.C2.669.v1.A.SL1-1
KH2012:KH.C2.669.v1.A.SL2-1
KH2012:KH.C2.669.v1.A.SL3-1
KH2012:KH.C2.669.v1.A.SL4-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000019919
NCBI Reference Sequence	XM_002126476.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cibd017j17

Plate: R1CiGC37p21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Ubiquitin-like_domsf	SUPERFAMILY	Ubiquitin-like domain superfamily
OTU_dom	ProSiteProfiles	OTU domain
OTU_dom	Pfam	OTU domain

GOSlim

27 results

GO Term	Annotation Origin	Type
DNA binding	Blast	molecular function
catalytic activity	Blast	molecular function
ubiquitin-protein transferase activity	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
cytoplasm	Orthology	cellular component
lysosome	Blast	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum lumen	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
cytosol	Blast	cellular component
proteolysis	Orthology	biological process
peptidase activity	Orthology	molecular function
zinc ion binding	Blast	molecular function
protein ubiquitination	Orthology	biological process
transferase activity	Blast	molecular function
hydrolase activity	Orthology	molecular function
kinase binding	Blast	molecular function
identical protein binding	Blast	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
metal ion binding	Blast	molecular function
extracellular exosome	Blast	cellular component
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
Golgi apparatus part	Orthology	cellular component
organelle organization	Orthology	biological process
membrane organization	Orthology	biological process
enzyme binding	Blast	molecular function

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mitotic cell cycle	Hs	biological process
thiol-dependent ubiquitin-specific protease activity	Hs	molecular function
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
Golgi apparatus	Hs	cellular component
Golgi stack	Hs	cellular component
proteolysis	Hs	biological process
Golgi organization	Hs	biological process
peptidase activity	Hs	molecular function
cysteine-type peptidase activity	Hs	molecular function
endoplasmic reticulum membrane fusion	Hs	biological process
protein ubiquitination	Hs	biological process
protein deubiquitination	Hs	biological process
hydrolase activity	Hs	molecular function
protein K11-linked deubiquitination	Hs	biological process
thiol-dependent ubiquitinyl hydrolase activity	Hs	molecular function
protein K48-linked deubiquitination	Hs	biological process

GO (Blast)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protease binding	Hs	molecular function	66.6	4.42e-11
DNA binding	Hs	molecular function	66.6	4.42e-11
catalytic activity	Hs	molecular function	66.6	4.42e-11
ubiquitin-protein transferase activity	Hs	molecular function	66.6	4.42e-11
thiol-dependent ubiquitin-specific protease activity	Hs	molecular function	624	0.0
protein binding	Hs	molecular function	66.6	4.42e-11
nucleus	Hs	cellular component	66.6	4.42e-11
cytoplasm	Hs	cellular component	624	0.0
lysosome	Hs	cellular component	66.6	4.42e-11
endoplasmic reticulum	Hs	cellular component	624	0.0
endoplasmic reticulum lumen	Hs	cellular component	624	0.0
Golgi apparatus	Hs	cellular component	624	0.0
Golgi stack	Hs	cellular component	624	0.0
cytosol	Hs	cellular component	66.6	4.42e-11
peptidase activity	Hs	molecular function	624	0.0
cysteine-type peptidase activity	Hs	molecular function	624	0.0
zinc ion binding	Hs	molecular function	66.6	4.42e-11
transferase activity	Hs	molecular function	66.6	4.42e-11
hydrolase activity	Hs	molecular function	624	0.0
kinase binding	Hs	molecular function	66.6	4.42e-11
thiol-dependent ubiquitinyl hydrolase activity	Hs	molecular function	624	0.0
identical protein binding	Hs	molecular function	66.6	4.42e-11
ubiquitin binding	Hs	molecular function	66.6	4.42e-11
intracellular membrane-bounded organelle	Hs	cellular component	66.6	4.42e-11
protein self-association	Hs	molecular function	66.6	4.42e-11
metal ion binding	Hs	molecular function	66.6	4.42e-11
Lys63-specific deubiquitinase activity	Hs	molecular function	66.6	4.42e-11
extracellular exosome	Hs	cellular component	66.6	4.42e-11
K63-linked polyubiquitin modification-dependent protein binding	Hs	molecular function	66.6	4.42e-11

GO (InterProScan)