Aniseed - Gene card

Gene Card

Best human hits

RPS3A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004915

Gene Model ID

KH2012:KH.C2.693

Location

KhC2:2684336..2688009

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005199
NCBI Reference Sequence	XM_002125286.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cilv017e19

Plate: R1CiGC26b09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Ribosomal_S1/3_euk	Hamap	40S ribosomal protein S1/3, eukaryotes
Ribosomal_S3Ae	SMART	Ribosomal protein S3Ae
Ribosomal_S3Ae	Pfam	Ribosomal protein S3Ae

GOSlim

20 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
cell differentiation	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
cytosolic small ribosomal subunit	Hs	cellular component
cell differentiation	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
negative regulation of apoptotic process	Hs	biological process
mRNA 5'-UTR binding	Hs	molecular function
extracellular exosome	Hs	cellular component

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	395	1.25e-140
structural constituent of ribosome	Hs	molecular function	395	1.25e-140
protein binding	Hs	molecular function	395	1.25e-140
intracellular	Hs	cellular component	395	1.25e-140
nucleus	Hs	cellular component	395	1.25e-140
nucleoplasm	Hs	cellular component	395	1.25e-140
nucleolus	Hs	cellular component	395	1.25e-140
cytoplasm	Hs	cellular component	395	1.25e-140
endoplasmic reticulum	Hs	cellular component	395	1.25e-140
cytosol	Hs	cellular component	395	1.25e-140
ribosome	Hs	cellular component	395	1.25e-140
focal adhesion	Hs	cellular component	395	1.25e-140
cytosolic small ribosomal subunit	Hs	cellular component	395	1.25e-140
intracellular ribonucleoprotein complex	Hs	cellular component	395	1.25e-140
mRNA 5'-UTR binding	Hs	molecular function	395	1.25e-140
extracellular exosome	Hs	cellular component	395	1.25e-140

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	Pfam	molecular function	1.2E-22
intracellular	Hamap	cellular component	37.105
ribosome	Pfam	cellular component	1.2E-22
translation	Pfam	biological process	1.2E-22

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cima8100716

cima873643

Gene collection 1 (N. Satoh)

ciad011h04

cilv017e19

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)