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Gene Card

Best human hits

ARFGEF1; ARFGEF2; FBXO8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004954

Gene Model ID

KH2012:KH.C2.729

Location

KhC2:2466041..2471076

Transcript Models and Sequences

  KH2012:KH.C2.729.v1.A.SL2-1
KH2012:KH.C2.729.v1.A.SL4-1
KH2012:KH.C2.729.v2.A.ND1-1
KH2012:KH.C2.729.v3.A.SL3-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000018836
Collections

Gateway full ORF

2 results

cima87918

Plate: VES57_N11

cima856352

Plate: VES63_K22

Gene collection 1 (N. Satoh)

1 result

cieg027o24

Plate: R1CiGC20e13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Sec7_dom Pfam Sec7 domain
F-box-like_dom_sf SUPERFAMILY F-box-like domain superfamily
F-box_dom ProSiteProfiles F-box domain
Sec7_dom SMART Sec7 domain
Sec7_C_sf Gene3D Sec7, C-terminal domain superfamily
Sec7_dom_sf SUPERFAMILY Sec7 domain superfamily
Sec7_dom ProSiteProfiles Sec7 domain

GOSlim

38 results

GO Term Annotation Origin Type
Golgi membrane Blast cellular component
binding Blast molecular function
protein binding Orthology molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
endosome Blast cellular component
Golgi apparatus Blast cellular component
microtubule organizing center Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
membrane Blast cellular component
cell junction Blast cellular component
cytoplasmic vesicle Blast cellular component
cell projection Blast cellular component
synapse Blast cellular component
perinuclear region of cytoplasm Blast cellular component
regulation of molecular function Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
enzyme binding Orthology molecular function
molecular function regulator Orthology molecular function
proteolysis Orthology biological process
small GTPase mediated signal transduction Orthology biological process
regulation of signal transduction Orthology biological process
Golgi apparatus part Blast cellular component
cell projection part Blast cellular component
microtubule Blast cellular component
cytoplasmic part Blast cellular component
plasma membrane region Blast cellular component
nuclear lumen Blast cellular component
cytoskeletal protein binding Blast molecular function
nuclear part Blast cellular component
organelle Blast cellular component
postsynapse Blast cellular component
neuron part Blast cellular component
receptor binding Blast molecular function

GO (Orthology)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ubiquitin ligase complex Hs cellular component
guanyl-nucleotide exchange factor activity Hs molecular function
ARF guanyl-nucleotide exchange factor activity Hs molecular function
protein binding Hs molecular function
ubiquitin-dependent protein catabolic process Hs biological process
regulation of ARF protein signal transduction Hs biological process
regulation of molecular function Hs biological process

GO (Blast)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 87.4 7.56e-19
ubiquitin ligase complex Hs cellular component 309 6.53e-105
guanyl-nucleotide exchange factor activity Hs molecular function 309 6.53e-105
ARF guanyl-nucleotide exchange factor activity Hs molecular function 309 6.53e-105
binding Hs molecular function 87.4 7.56e-19
protein binding Hs molecular function 309 6.53e-105
nucleus Hs cellular component 87.4 7.56e-19
nucleoplasm Hs cellular component 87.4 7.56e-19
nucleolus Hs cellular component 87.4 7.56e-19
cytoplasm Hs cellular component 87.4 7.56e-19
endosome Hs cellular component 80.9 1.04e-16
Golgi apparatus Hs cellular component 87.4 7.56e-19
trans-Golgi network Hs cellular component 87.4 7.56e-19
microtubule organizing center Hs cellular component 80.9 1.04e-16
cytosol Hs cellular component 87.4 7.56e-19
cytoskeleton Hs cellular component 80.9 1.04e-16
axonemal microtubule Hs cellular component 80.9 1.04e-16
membrane Hs cellular component 87.4 7.56e-19
nuclear matrix Hs cellular component 87.4 7.56e-19
myosin binding Hs molecular function 87.4 7.56e-19
cell junction Hs cellular component 80.9 1.04e-16
dendrite Hs cellular component 80.9 1.04e-16
small nuclear ribonucleoprotein complex Hs cellular component 87.4 7.56e-19
cytoplasmic vesicle Hs cellular component 80.9 1.04e-16
asymmetric synapse Hs cellular component 80.9 1.04e-16
symmetric synapse Hs cellular component 80.9 1.04e-16
protein kinase A regulatory subunit binding Hs molecular function 87.4 7.56e-19
cell projection Hs cellular component 80.9 1.04e-16
dendritic spine Hs cellular component 80.9 1.04e-16
synapse Hs cellular component 80.9 1.04e-16
perinuclear region of cytoplasm Hs cellular component 87.4 7.56e-19
GABA receptor binding Hs molecular function 80.9 1.04e-16
recycling endosome Hs cellular component 80.9 1.04e-16

GO (InterProScan)

3 results

GO Term Analysis Type e-value
ARF guanyl-nucleotide exchange factor activity SUPERFAMILY molecular function 1.96E-38
protein binding SUPERFAMILY molecular function 1.7E-13
regulation of ARF protein signal transduction SUPERFAMILY biological process 1.96E-38

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