Aniseed - Gene card

Gene Card

Best human hits

RPL7; RPL7L1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004998

Gene Model ID

KH2012:KH.C2.77

Location

KhC2:6659827..6663337

Transcript Models and Sequences

KH2012:KH.C2.77.v1.A.nonSL10-1
KH2012:KH.C2.77.v1.A.nonSL1-1
KH2012:KH.C2.77.v1.A.nonSL2-1
KH2012:KH.C2.77.v1.A.nonSL4-1
KH2012:KH.C2.77.v1.A.nonSL5-1
KH2012:KH.C2.77.v1.A.nonSL6-1
KH2012:KH.C2.77.v1.A.nonSL7-1
KH2012:KH.C2.77.v1.A.nonSL8-1
KH2012:KH.C2.77.v1.A.nonSL9-1
KH2012:KH.C2.77.v1.R.ND3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000007209
NCBI Reference Sequence	XM_004225700.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

ciad017f24

Plate: R1CiGC02h08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Ribosomal_L30_CS	ProSitePatterns	Ribosomal protein L30, conserved site
Ribosomal_L30_ferredoxin-like	Pfam	Ribosomal protein L30, ferredoxin-like fold domain
L30_ferredoxin-like_sf	SUPERFAMILY	Ribosomal protein L30, ferredoxin-like fold domain superfamily
L30_ferredoxin-like_sf	Gene3D	Ribosomal protein L30, ferredoxin-like fold domain superfamily
Ribosomal_L7_euk_arc	CDD	Ribosomal protein L7, eukaryotic/archaeal
Ribosomal_L30_N	Pfam	Ribosomal protein L30, N-terminal
Ribosomal_L7_euk	TIGRFAM	Ribosomal protein L7, eukaryotic
Ribosomal_L30_central_dom_arc	Gene3D	Ribosomal protein L30, central domain, archaeal type

GOSlim

18 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
protein homodimerization activity	Orthology	molecular function
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Hs	biological process
cytoplasmic translation	Hs	biological process
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
membrane	Hs	cellular component
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
ribosomal large subunit biogenesis	Hs	biological process
protein homodimerization activity	Hs	molecular function
extracellular exosome	Hs	cellular component

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
DNA binding	Hs	molecular function	322	2.98e-112
RNA binding	Hs	molecular function	322	2.98e-112
mRNA binding	Hs	molecular function	322	2.98e-112
structural constituent of ribosome	Hs	molecular function	322	2.98e-112
protein binding	Hs	molecular function	322	2.98e-112
nucleus	Hs	cellular component	322	2.98e-112
nucleolus	Hs	cellular component	322	2.98e-112
cytoplasm	Hs	cellular component	322	2.98e-112
cytosol	Hs	cellular component	322	2.98e-112
ribosome	Hs	cellular component	322	2.98e-112
focal adhesion	Hs	cellular component	322	2.98e-112
membrane	Hs	cellular component	322	2.98e-112
cytosolic large ribosomal subunit	Hs	cellular component	322	2.98e-112
intracellular ribonucleoprotein complex	Hs	cellular component	322	2.98e-112
protein homodimerization activity	Hs	molecular function	322	2.98e-112
extracellular exosome	Hs	cellular component	322	2.98e-112

GO (InterProScan)