Gene Card
Best human hits
SRSF4; SRSF5; SRSF6
Unique Gene ID
Cirobu.g00005009
Gene Model ID
KH2012:KH.C2.780
Location
KhC2:6627249..6629437
Transcript Models and Sequences
KH2012:KH.C2.780.v1.A.ND1-1
KH2012:KH.C2.780.v1.A.SL2-1
KH2012:KH.C2.780.v1.A.SL3-1
KH2012:KH.C2.780.v1.A.SL4-1
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000021200 |
| NCBI Reference Sequence | XR_717144.2 |
Gateway full ORF
2 results
cien108579
Plate: VES87_F06
cima892287
Plate: VES71_M02
Gene collection 1 (N. Satoh)
2 results
cicl009i18
Plate: R1CiGC09o12
cicl045a06
Plate: R1CiGC13e11
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
6 results
| IPR Term | Analysis | Definition |
|---|---|---|
| RRM1_SRSF4-like | CDD | Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1 |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| RRM_dom | SMART | RNA recognition motif domain |
| RRM_dom | Pfam | RNA recognition motif domain |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
GOSlim
9 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleic acid binding | Blast | molecular function |
| RNA binding | Blast | molecular function |
| protein binding | Blast | molecular function |
| nucleus | Blast | cellular component |
| nucleoplasm | Blast | cellular component |
| nucleolus | Blast | cellular component |
| cytosol | Blast | cellular component |
| nuclear speck | Blast | cellular component |
| protein kinase binding | Blast | molecular function |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
11 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 207 | 1.17e-63 |
| RNA binding | Hs | molecular function | 207 | 1.17e-63 |
| protein binding | Hs | molecular function | 207 | 1.17e-63 |
| nucleus | Hs | cellular component | 207 | 1.17e-63 |
| nucleoplasm | Hs | cellular component | 207 | 1.17e-63 |
| nucleolus | Hs | cellular component | 180 | 1.72e-55 |
| cytosol | Hs | cellular component | 180 | 1.72e-55 |
| nuclear speck | Hs | cellular component | 207 | 1.17e-63 |
| pre-mRNA binding | Hs | molecular function | 186 | 3.79e-57 |
| protein kinase B binding | Hs | molecular function | 180 | 1.72e-55 |
| sequence-specific mRNA binding | Hs | molecular function | 207 | 1.17e-63 |
GO (InterProScan)
1 result
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 8.88E-36 |
