Aniseed - Gene card

Gene Card

Best human hits

AGFG1; AGFG2; SMAP1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005163

Gene Model ID

KH2012:KH.C2.92

Location

KhC2:3265048..3267261

Transcript Models and Sequences

KH2012:KH.C2.92.v1.A.SL1-1
KH2012:KH.C2.92.v1.A.SL2-1
KH2012:KH.C2.92.v1.A.SL3-1
KH2012:KH.C2.92.v1.A.SL4-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000011487
NCBI Reference Sequence	NM_001078433.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg017k02

Plate: R1CiGC18o07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
ARFGAP/RecO	SUPERFAMILY	ARFGAP/RecO-like zinc finger
ArfGAP_dom	ProSiteProfiles	Arf GTPase activating protein
ArfGAP_dom_sf	Gene3D	ArfGAP domain superfamily
ArfGAP_dom	SMART	Arf GTPase activating protein
ArfGAP_dom	PRINTS	Arf GTPase activating protein
ArfGAP_dom	Pfam	Arf GTPase activating protein

GOSlim

26 results

GO Term	Annotation Origin	Type
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
GTPase activator activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Blast	cellular component
cytosol	Orthology	cellular component
plasma membrane	Blast	cellular component
multicellular organism development	Orthology	biological process
spermatogenesis	Orthology	biological process
membrane	Orthology	cellular component
cell differentiation	Orthology	biological process
cytoplasmic vesicle	Orthology	cellular component
cell projection	Orthology	cellular component
neuronal cell body	Orthology	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
positive regulation of GTPase activity	Orthology	biological process
metal ion binding	Orthology	molecular function
membrane organization	Orthology	biological process
cell development	Orthology	biological process
nuclear envelope	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular protein transport	Orthology	biological process
gene expression	Orthology	biological process
organelle organization	Orthology	biological process
organic substance transport	Orthology	biological process

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
acrosome assembly	Hs	biological process
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
GTPase activator activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nuclear pore	Hs	cellular component
cytosol	Hs	cellular component
mRNA export from nucleus	Hs	biological process
multicellular organism development	Hs	biological process
spermatogenesis	Hs	biological process
spermatid nucleus differentiation	Hs	biological process
membrane	Hs	cellular component
cell differentiation	Hs	biological process
cytoplasmic vesicle	Hs	cellular component
cell projection	Hs	cellular component
neuronal cell body	Hs	cellular component
intracellular membrane-bounded organelle	Hs	cellular component
positive regulation of GTPase activity	Hs	biological process
intermediate filament organization	Hs	biological process
metal ion binding	Hs	molecular function
mRNA transport	Hs	biological process
membrane organization	Hs	biological process

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
DNA binding	Hs	molecular function	207	1.06e-59
RNA binding	Hs	molecular function	207	1.06e-59
GTPase activator activity	Hs	molecular function	207	1.06e-59
protein binding	Hs	molecular function	207	1.06e-59
nucleus	Hs	cellular component	207	1.06e-59
nuclear pore	Hs	cellular component	207	1.06e-59
cytoplasm	Hs	cellular component	63.2	1.74e-10
cytosol	Hs	cellular component	207	1.06e-59
plasma membrane	Hs	cellular component	63.2	1.74e-10
membrane	Hs	cellular component	184	3.55e-52
clathrin binding	Hs	molecular function	63.2	1.74e-10
cytoplasmic vesicle	Hs	cellular component	207	1.06e-59
cell projection	Hs	cellular component	207	1.06e-59
neuronal cell body	Hs	cellular component	207	1.06e-59
intracellular membrane-bounded organelle	Hs	cellular component	207	1.06e-59
metal ion binding	Hs	molecular function	207	1.06e-59

GO (InterProScan)