Aniseed - Gene card

Gene Card

Best human hits

EXD1; EXOSC10

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005253

Gene Model ID

KH2012:KH.C3.101

Location

KhC3:3160660..3168228

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000018374
ENSEMBL	ENSCING00000022789

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

4 results

cicl099o24

Plate: R1CiGC39b06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
HRDC_dom	ProSiteProfiles	HRDC domain
RNaseH-like_sf	SUPERFAMILY	Ribonuclease H-like superfamily
HRDC-like_sf	SUPERFAMILY	HRDC-like superfamily
3'-5'_exonuclease_dom	Pfam	3'-5' exonuclease domain
HRDC_dom	Pfam	HRDC domain
3'-5'_exonuclease_dom	SMART	3'-5' exonuclease domain
HRDC_dom	SMART	HRDC domain

GOSlim

31 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
nuclear-transcribed mRNA catabolic process	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
catalytic activity	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
nucleobase-containing compound metabolic process	Orthology	biological process
RNA processing	Orthology	biological process
membrane	Orthology	cellular component
hydrolase activity	Orthology	molecular function
protein homodimerization activity	Blast	molecular function
cellular metabolic process	Orthology	biological process
RNA metabolic process	Orthology	biological process
nuclear lumen	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular part	Orthology	cellular component
organelle organization	Orthology	biological process
DNA metabolic process	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
RNA catabolic process	Orthology	biological process
mRNA processing	Orthology	biological process
cytoplasmic part	Blast	cellular component

GO (Orthology)

36 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
3'-5'-exoribonuclease activity	Hs	molecular function
nuclear exosome (RNase complex)	Hs	cellular component
exosome (RNase complex)	Hs	cellular component
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
maturation of 5.8S rRNA	Hs	biological process
nuclear-transcribed mRNA catabolic process	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
catalytic activity	Hs	molecular function
nuclease activity	Hs	molecular function
exonuclease activity	Hs	molecular function
exoribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
nucleobase-containing compound metabolic process	Hs	biological process
rRNA processing	Hs	biological process
RNA processing	Hs	biological process
3'-5' exonuclease activity	Hs	molecular function
membrane	Hs	cellular component
hydrolase activity	Hs	molecular function
negative regulation of telomere maintenance via telomerase	Hs	biological process
transcriptionally active chromatin	Hs	cellular component
cellular metabolic process	Hs	biological process
telomerase RNA binding	Hs	molecular function
nuclear mRNA surveillance	Hs	biological process
CUT catabolic process	Hs	biological process
nuclear polyadenylation-dependent rRNA catabolic process	Hs	biological process
nuclear retention of unspliced pre-mRNA at the site of transcription	Hs	biological process
nucleic acid phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis, exonucleolytic	Hs	biological process

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	358	1.96e-115
3'-5'-exoribonuclease activity	Hs	molecular function	358	1.96e-115
nuclear exosome (RNase complex)	Hs	cellular component	358	1.96e-115
exosome (RNase complex)	Hs	cellular component	358	1.96e-115
nucleic acid binding	Hs	molecular function	358	1.96e-115
RNA binding	Hs	molecular function	358	1.96e-115
catalytic activity	Hs	molecular function	358	1.96e-115
nuclease activity	Hs	molecular function	358	1.96e-115
exonuclease activity	Hs	molecular function	358	1.96e-115
exoribonuclease activity	Hs	molecular function	358	1.96e-115
protein binding	Hs	molecular function	358	1.96e-115
intracellular	Hs	cellular component	358	1.96e-115
nucleus	Hs	cellular component	358	1.96e-115
nucleoplasm	Hs	cellular component	358	1.96e-115
nucleolus	Hs	cellular component	358	1.96e-115
cytoplasm	Hs	cellular component	358	1.96e-115
cytosol	Hs	cellular component	358	1.96e-115
3'-5' exonuclease activity	Hs	molecular function	358	1.96e-115
membrane	Hs	cellular component	358	1.96e-115
hydrolase activity	Hs	molecular function	358	1.96e-115
transcriptionally active chromatin	Hs	cellular component	358	1.96e-115
protein homodimerization activity	Hs	molecular function	40.8	0.002
P granule	Hs	cellular component	40.8	0.002
telomerase RNA binding	Hs	molecular function	358	1.96e-115
PET complex	Hs	cellular component	40.8	0.002

GO (InterProScan)