Aniseed - Gene card

Gene Card

Best human hits

ZNF341; ZNF835; ZNF91

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005323

Gene Model ID

KH2012:KH.C3.165

Location

KhC3:1465264..1474037

Transcript Models and Sequences

KH2012:KH.C3.165.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000001724
NCBI Reference Sequence	NM_001078400.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb018d23

Plate: R1CiGC31g11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	SMART	Zinc finger C2H2-type

GOSlim

11 results

GO Term	Annotation Origin	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Blast	cellular component
nucleus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
zinc ion binding	Blast	molecular function
metal ion binding	Orthology	molecular function

GO (Orthology)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
metal ion binding	Hs	molecular function

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	167	1.15e-42
nucleic acid binding	Hs	molecular function	339	1.01e-103
DNA binding	Hs	molecular function	339	1.01e-103
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	339	1.01e-103
protein binding	Hs	molecular function	339	1.01e-103
intracellular	Hs	cellular component	167	1.15e-42
nucleus	Hs	cellular component	339	1.01e-103
zinc ion binding	Hs	molecular function	167	1.15e-42
metal ion binding	Hs	molecular function	339	1.01e-103

GO (InterProScan)