Aniseed - Gene card

Gene Card

Best human hits

RORA; RORB; RORC

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005327

Gene Model ID

KH2012:KH.C3.17

Location

KhC3:396585..410210

Transcript Models and Sequences

KH2012:KH.C3.17.v1.A.SL1-1
KH2012:KH.C3.17.v2.R.nonSL3-1
KH2012:KH.C3.17.v2.R.nonSL4-1
KH2012:KH.C3.17.v2.R.SL2-1
KH2012:KH.C3.17.v2.R.SL5-1
KH2012:KH.C3.17.v3.R.SL1-1
KH2012:KH.C3.17.v4.A.nonSL3-1
KH2012:KH.C3.17.v4.A.nonSL6-1
KH2012:KH.C3.17.v4.A.SL2-1
KH2012:KH.C3.17.v4.R.nonSL4-1
KH2012:KH.C3.17.v5.A.SL5-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000002152
NCBI Reference Sequence	NM_001078553.1
NCBI Reference Sequence	XM_009859574.2
NCBI Reference Sequence	XM_018817850.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg017h20

Plate: R1CiGC18m07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

1 results

Rorc -716/-582 REG00000333 [ inactive_region ]

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
NHR_like_dom_sf	SUPERFAMILY	Nuclear hormone receptor-like domain superfamily
Znf_NHR/GATA	Gene3D	Zinc finger, NHR/GATA-type
ThyrH_rcpt	PRINTS	Thyroid hormone receptor
Nucl_hrmn_rcpt_lig-bd	Pfam	Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt	ProSitePatterns	Zinc finger, nuclear hormone receptor-type
Nuclear_hrmn_rcpt	PRINTS	Nuclear hormone receptor
Znf_hrmn_rcpt	SMART	Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd	SMART	Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt	ProSiteProfiles	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	Pfam	Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt	PRINTS	Zinc finger, nuclear hormone receptor-type

GOSlim

21 results

GO Term	Annotation Origin	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
transcription factor binding	Blast	molecular function
zinc ion binding	Blast	molecular function
nuclear body	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
transcription regulatory region sequence-specific DNA binding	Blast	molecular function
signal transduction	Blast	biological process
response to lipid	Blast	biological process
signaling receptor activity	Blast	molecular function
cellular response to organic substance	Blast	biological process
organic cyclic compound binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	375	4.89e-121
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	370	3.30e-120
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	375	4.89e-121
core promoter sequence-specific DNA binding	Hs	molecular function	375	4.89e-121
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	370	3.30e-120
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	342	1.12e-108
transcription corepressor binding	Hs	molecular function	375	4.89e-121
transcription coactivator binding	Hs	molecular function	375	4.89e-121
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	375	4.89e-121
DNA binding	Hs	molecular function	375	4.89e-121
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	375	4.89e-121
steroid hormone receptor activity	Hs	molecular function	375	4.89e-121
nuclear receptor activity	Hs	molecular function	375	4.89e-121
protein binding	Hs	molecular function	375	4.89e-121
nucleus	Hs	cellular component	375	4.89e-121
nucleoplasm	Hs	cellular component	375	4.89e-121
beta-catenin binding	Hs	molecular function	375	4.89e-121
transcription factor binding	Hs	molecular function	375	4.89e-121
oxysterol binding	Hs	molecular function	375	4.89e-121
zinc ion binding	Hs	molecular function	375	4.89e-121
nuclear body	Hs	cellular component	342	1.12e-108
sequence-specific DNA binding	Hs	molecular function	375	4.89e-121
metal ion binding	Hs	molecular function	375	4.89e-121
transcription factor activity, direct ligand regulated sequence-specific DNA binding	Hs	molecular function	375	4.89e-121

GO (InterProScan)

9 results

GO Term	Analysis	Type	e-value
DNA binding	PRINTS	molecular function	3.9E-16
transcription factor activity, sequence-specific DNA binding	Pfam	molecular function	4.7E-16
steroid hormone receptor activity	PRINTS	molecular function	3.9E-16
nucleus	PRINTS	cellular component	3.9E-16
regulation of transcription, DNA-templated	SMART	biological process	9.0E-39
zinc ion binding	Gene3D	molecular function	1.5E-18
steroid hormone mediated signaling pathway	SMART	biological process	6.1E-20
sequence-specific DNA binding	Pfam	molecular function	4.7E-16
thyroid hormone receptor activity	PRINTS	molecular function	2.1E-9