Aniseed - Gene card

Gene Card

Best human hits

EIF2S2; EIF5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005352

Gene Model ID

KH2012:KH.C3.192

Location

KhC3:2146663..2149798

Transcript Models and Sequences

KH2012:KH.C3.192.v1.R.SL1-1
KH2012:KH.C3.192.v1.R.SL2-1
KH2012:KH.C3.192.v1.R.SL3-1
KH2012:KH.C3.192.v2.B.SL1-1
KH2012:KH.C3.192.v2.B.SL2-1
KH2012:KH.C3.192.v2.B.SL3-1
KH2012:KH.C3.192.v2.B.SL4-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

4 results

citb028m21

Plate: R1CiGC31i24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Transl_init_fac_IF2/IF5	SMART	Translation initiation factor IF2/IF5
Transl_init_fac_IF2/IF5_N	SUPERFAMILY	Translation initiation factor IF2/IF5, N-terminal
Transl_init_fac_IF2/IF5	Pfam	Translation initiation factor IF2/IF5

GOSlim

18 results

GO Term	Annotation Origin	Type
nucleotide binding	Blast	molecular function
RNA binding	Orthology	molecular function
GTPase activity	Blast	molecular function
binding	Blast	molecular function
protein binding	Orthology	molecular function
GTP binding	Blast	molecular function
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Blast	cellular component
translational initiation	Orthology	biological process
metal ion binding	Orthology	molecular function
transmembrane transport	Orthology	biological process
regulation of gene expression	Orthology	biological process
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process
cell adhesion molecule binding	Blast	molecular function

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
translation initiation factor activity	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
eukaryotic translation initiation factor 2 complex	Hs	cellular component
translation	Hs	biological process
translational initiation	Hs	biological process
translation factor activity, RNA binding	Hs	molecular function
male gonad development	Hs	biological process
metal ion binding	Hs	molecular function
transmembrane transport	Hs	biological process

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	49.3	1.58e-06
RNA binding	Hs	molecular function	271	2.89e-89
translation initiation factor activity	Hs	molecular function	271	2.89e-89
GTPase activity	Hs	molecular function	49.3	1.58e-06
binding	Hs	molecular function	49.3	1.58e-06
protein binding	Hs	molecular function	271	2.89e-89
GTP binding	Hs	molecular function	49.3	1.58e-06
cytoplasm	Hs	cellular component	271	2.89e-89
cytosol	Hs	cellular component	271	2.89e-89
eukaryotic translation initiation factor 2 complex	Hs	cellular component	271	2.89e-89
plasma membrane	Hs	cellular component	49.3	1.58e-06
translation factor activity, RNA binding	Hs	molecular function	271	2.89e-89
cadherin binding	Hs	molecular function	49.3	1.58e-06
metal ion binding	Hs	molecular function	271	2.89e-89
eukaryotic initiation factor eIF2 binding	Hs	molecular function	49.3	1.58e-06

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
translation initiation factor activity	SMART	molecular function	4.7E-51
translational initiation	SMART	biological process	4.7E-51