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GENE CARD

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Gene Card

Best human hits

FBN1; FBN2; FBN3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005389

Gene Model ID

KH2012:KH.C3.225

Location

KhC3:6392411..6425024

Transcript Models and Sequences

  KH2012:KH.C3.225.v10.C.SL2-1
KH2012:KH.C3.225.v11.C.SL2-1
KH2012:KH.C3.225.v12.C.SL2-1
KH2012:KH.C3.225.v13.C.SL2-1
KH2012:KH.C3.225.v1.C.ND1-1
KH2012:KH.C3.225.v2.C.ND1-1
KH2012:KH.C3.225.v3.C.ND1-1
KH2012:KH.C3.225.v4.C.ND1-1
KH2012:KH.C3.225.v5.C.ND1-1
KH2012:KH.C3.225.v6.C.ND1-1
KH2012:KH.C3.225.v7.C.ND1-1
KH2012:KH.C3.225.v8.C.SL2-1
KH2012:KH.C3.225.v9.C.SL2-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000008571
Collections

Gene collection 1 (N. Satoh)

1 result

ciad013k21

Plate: R1CiGC02k18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

16 results

IPR Term Analysis Definition
EGF-like_dom ProSiteProfiles EGF-like domain
FBN PANTHER Fibrillin
TB_dom Pfam TB domain
EGF-type_Asp/Asn_hydroxyl_site ProSitePatterns EGF-type aspartate/asparagine hydroxylation site
EGF-like_CS ProSitePatterns EGF-like, conserved site
Growth_fac_rcpt_cys_sf SUPERFAMILY Growth factor receptor cysteine-rich domain superfamily
TB_dom_sf SUPERFAMILY TGF-beta binding (TB) domain superfamily
TB_dom ProSiteProfiles TB domain
EGF_Ca-bd_CS ProSitePatterns EGF-like calcium-binding, conserved site
TB_dom_sf Gene3D TGF-beta binding (TB) domain superfamily
EGF-like_CS Pfam EGF-like, conserved site
EGF-like_Ca-bd_dom SMART EGF-like calcium-binding domain
EGF-like_Ca-bd_dom Pfam EGF-like calcium-binding domain
EGF-like_dom SMART EGF-like domain
EGF_dom Pfam EGF domain
cEGF Pfam Complement Clr-like EGF domain

GOSlim

32 results

GO Term Annotation Origin Type
integrin binding Orthology molecular function
calcium ion binding Orthology molecular function
protein binding Orthology molecular function
extracellular region Orthology cellular component
extracellular space Orthology cellular component
endoplasmic reticulum lumen Orthology cellular component
heart development Orthology biological process
anatomical structure morphogenesis Orthology biological process
extracellular matrix organization Orthology biological process
identical protein binding Orthology molecular function
macromolecular complex binding Orthology molecular function
extracellular exosome Orthology cellular component
system development Orthology biological process
extracellular region part Orthology cellular component
animal organ development Orthology biological process
receptor binding Orthology molecular function
molecular function regulator Orthology molecular function
regulation of signal transduction Orthology biological process
signaling receptor activity Orthology molecular function
structural molecule activity Orthology molecular function
anion binding Orthology molecular function
carbohydrate derivative binding Orthology molecular function
regulation of molecular function Orthology biological process
multicellular organism development Orthology biological process
cell adhesion Orthology biological process
cell surface receptor signaling pathway Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
cellular response to organic substance Orthology biological process
protein localization Orthology biological process
negative regulation of signal transduction Orthology biological process
cellular protein modification process Orthology biological process
cell differentiation Orthology biological process

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
skeletal system development Hs biological process
microfibril Hs cellular component
kidney development Hs biological process
integrin binding Hs molecular function
hormone activity Hs molecular function
extracellular matrix structural constituent Hs molecular function
calcium ion binding Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
proteinaceous extracellular matrix Hs cellular component
basement membrane Hs cellular component
extracellular space Hs cellular component
endoplasmic reticulum lumen Hs cellular component
heart development Hs biological process
heparin binding Hs molecular function
anatomical structure morphogenesis Hs biological process
regulation of receptor activity Hs biological process
extracellular matrix constituent conferring elasticity Hs molecular function
extracellular matrix organization Hs biological process
embryonic limb morphogenesis Hs biological process
positive regulation of bone mineralization Hs biological process
extracellular matrix Hs cellular component
cell adhesion mediated by integrin Hs biological process
limb morphogenesis Hs biological process
sequestering of BMP in extracellular matrix Hs biological process
identical protein binding Hs molecular function
camera-type eye development Hs biological process
post-translational protein modification Hs biological process
macromolecular complex binding Hs molecular function
positive regulation of osteoblast differentiation Hs biological process
embryonic eye morphogenesis Hs biological process
post-embryonic eye morphogenesis Hs biological process
extracellular exosome Hs cellular component
cellular response to transforming growth factor beta stimulus Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
microfibril Hs cellular component 2207 0.0
integrin binding Hs molecular function 1981 0.0
hormone activity Hs molecular function 1981 0.0
extracellular matrix structural constituent Hs molecular function 2207 0.0
calcium ion binding Hs molecular function 2207 0.0
protein binding Hs molecular function 2207 0.0
extracellular region Hs cellular component 2207 0.0
proteinaceous extracellular matrix Hs cellular component 2207 0.0
basement membrane Hs cellular component 1981 0.0
extracellular space Hs cellular component 1981 0.0
endoplasmic reticulum lumen Hs cellular component 1981 0.0
heparin binding Hs molecular function 1981 0.0
extracellular matrix constituent conferring elasticity Hs molecular function 2207 0.0
extracellular matrix Hs cellular component 2207 0.0
identical protein binding Hs molecular function 1981 0.0
macromolecular complex binding Hs molecular function 1981 0.0
extracellular exosome Hs cellular component 1981 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
extracellular matrix structural constituent PANTHER molecular function 0.0
calcium ion binding PANTHER molecular function 0.0
proteinaceous extracellular matrix PANTHER cellular component 0.0

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