Aniseed - Gene card

Gene Card

Best human hits

RPS27; RPS27L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005412

Gene Model ID

KH2012:KH.C3.248

Location

KhC3:5019248..5021432

Transcript Models and Sequences

KH2012:KH.C3.248.v1.A.ND5-1
KH2012:KH.C3.248.v1.A.nonSL10-1
KH2012:KH.C3.248.v1.A.nonSL11-1
KH2012:KH.C3.248.v1.A.nonSL12-1
KH2012:KH.C3.248.v1.A.nonSL3-1
KH2012:KH.C3.248.v1.A.nonSL6-1
KH2012:KH.C3.248.v1.A.nonSL8-1
KH2012:KH.C3.248.v1.A.nonSL9-1
KH2012:KH.C3.248.v1.A.SL2-1
KH2012:KH.C3.248.v1.C.nonSL1-1
KH2012:KH.C3.248.v1.C.nonSL7-1
KH2012:KH.C3.248.v2.C.SL4-1

External Database Gene Card

External database links

No result

Collections

Gene collection 1 (N. Satoh)

1 result

ciad019d07

Plate: R1CiGC03e11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Ribosomal_S27e	ProDom	Ribosomal protein S27e
Ribosomal_S27e	Hamap	Ribosomal protein S27e
Ribosomal_S27e	Pfam	Ribosomal protein S27e
Ribosomal_zn-bd	SUPERFAMILY	Zinc-binding ribosomal protein
Ribosomal_S27e	PANTHER	Ribosomal protein S27e
Ribosomal_S27e	ProSitePatterns	Ribosomal protein S27e

GOSlim

25 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
zinc ion binding	Orthology	molecular function
cell proliferation	Orthology	biological process
metal ion binding	Orthology	molecular function
RNA processing	Orthology	biological process
organelle organization	Orthology	biological process
intracellular organelle part	Orthology	cellular component
positive regulation of gene expression	Blast	biological process
nucleic acid binding	Blast	molecular function
endopeptidase activity	Blast	molecular function
enzyme activator activity	Blast	molecular function
positive regulation of hydrolase activity	Blast	biological process
enzyme binding	Blast	molecular function
positive regulation of apoptotic process	Blast	biological process

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal small subunit assembly	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
sister chromatid cohesion	Hs	biological process
zinc ion binding	Hs	molecular function
cell proliferation	Hs	biological process
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
metal ion binding	Hs	molecular function

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
DNA binding	Hs	molecular function	146	8.89e-48
RNA binding	Hs	molecular function	146	8.89e-48
structural constituent of ribosome	Hs	molecular function	146	8.89e-48
protein binding	Hs	molecular function	146	8.89e-48
intracellular	Hs	cellular component	146	8.89e-48
nucleus	Hs	cellular component	146	8.89e-48
nucleoplasm	Hs	cellular component	146	8.89e-48
cytosol	Hs	cellular component	146	8.89e-48
ribosome	Hs	cellular component	146	8.89e-48
zinc ion binding	Hs	molecular function	146	8.89e-48
translation activator activity	Hs	molecular function	140	3.43e-45
cysteine-type endopeptidase activator activity involved in apoptotic process	Hs	molecular function	140	3.43e-45
cytosolic small ribosomal subunit	Hs	cellular component	146	8.89e-48
intracellular ribonucleoprotein complex	Hs	cellular component	146	8.89e-48
metal ion binding	Hs	molecular function	146	8.89e-48

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	4.2E-54
intracellular	PANTHER	cellular component	4.2E-54
ribosome	PANTHER	cellular component	4.2E-54
translation	PANTHER	biological process	4.2E-54