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GENE CARD

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Gene Card

Best human hits

SPTB; SPTBN1; SPTBN2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005422

Gene Model ID

KH2012:KH.C3.257

Location

KhC3:5151929..5189463

Transcript Models and Sequences

  KH2012:KH.C3.257.v1.C.ND1-1
KH2012:KH.C3.257.v1.C.nonSL5-1
KH2012:KH.C3.257.v2.A.SL4-2
KH2012:KH.C3.257.v3.A.SL2-2
KH2012:KH.C3.257.v4.A.SL3-2

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000008947
NCBI Reference Sequence XM_018811262.1
NCBI Reference Sequence XM_018811263.1
Collections

Gene collection 1 (N. Satoh)

3 results

citb11g3

Plate: R1CiGC30a18

cilv007n19

Plate: R1CiGC25j01

ciad078n12

Plate: R1CiGC07d08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

2 results

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
Spectrin_repeat Pfam Spectrin repeat
PH-like_dom_sf Gene3D PH-like domain superfamily
Spectrin/alpha-actinin SMART Spectrin/alpha-actinin
CH_dom_sf Gene3D CH domain superfamily
Spectrin_bsu PIRSF Spectrin, beta subunit
CH-domain CDD Calponin homology domain
CH-domain SMART Calponin homology domain
CH-domain ProSiteProfiles Calponin homology domain
PH_dom-spectrin-type PRINTS Pleckstrin homology domain, spectrin-type
CH_dom_sf SUPERFAMILY CH domain superfamily
Actinin_actin-bd_CS ProSitePatterns Actinin-type actin-binding domain, conserved site
PH_domain SMART Pleckstrin homology domain
CH-domain Pfam Calponin homology domain
PH_domain ProSiteProfiles Pleckstrin homology domain

GOSlim

68 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
actin binding Orthology molecular function
protein binding Orthology molecular function
calmodulin binding Orthology molecular function
extracellular space Orthology cellular component
nucleus Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
Golgi apparatus Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
plasma membrane Orthology cellular component
axon guidance Orthology biological process
membrane Orthology cellular component
apical plasma membrane Orthology cellular component
cell junction Orthology cellular component
macromolecular complex Orthology cellular component
neuronal cell body Orthology cellular component
actin filament binding Orthology molecular function
regulation of molecular function Orthology biological process
extracellular exosome Orthology cellular component
adherens junction Orthology cellular component
axonogenesis Orthology biological process
sensory perception of sound Orthology biological process
reproductive process Orthology biological process
axon Orthology cellular component
cellular protein localization Orthology biological process
intracellular signal transduction Orthology biological process
protein phosphorylation Orthology biological process
membrane organization Orthology biological process
cell division Orthology biological process
enzyme binding Orthology molecular function
molecular function regulator Orthology molecular function
organelle organization Orthology biological process
structural molecule activity Orthology molecular function
anion binding Orthology molecular function
cell periphery Orthology cellular component
cytoplasmic part Orthology cellular component
intracellular transport Orthology biological process
nervous system development Orthology biological process
cytoskeletal part Orthology cellular component
organelle Orthology cellular component
postsynapse Orthology cellular component
neuron part Orthology cellular component
immune system process Orthology biological process
cytoskeletal protein binding Orthology molecular function
cell projection membrane Orthology cellular component
cell leading edge Orthology cellular component
intrinsic component of plasma membrane Orthology cellular component
organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
developmental process Orthology biological process
protein transport Orthology biological process
establishment of protein localization to membrane Orthology biological process
cell adhesion molecule binding Orthology molecular function
protein localization to membrane Orthology biological process
sodium ion transport Orthology biological process
cell Orthology cellular component
sexual reproduction Orthology biological process
nuclear lumen Orthology cellular component
nuclear body Orthology cellular component
nervous system process Orthology biological process
chemical synaptic transmission Orthology biological process
central nervous system development Orthology biological process
cell projection part Orthology cellular component
neuron development Orthology biological process
signaling Orthology biological process
neuron projection Orthology cellular component

GO (Orthology)

79 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
MAPK cascade Hs biological process
mitotic cytokinesis Hs biological process
RNA binding Hs molecular function
actin binding Hs molecular function
Ras guanyl-nucleotide exchange factor activity Hs molecular function
structural constituent of cytoskeleton Hs molecular function
protein binding Hs molecular function
calmodulin binding Hs molecular function
phospholipid binding Hs molecular function
extracellular space Hs cellular component
nucleus Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
Golgi apparatus Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
plasma membrane Hs cellular component
cell cortex Hs cellular component
ER to Golgi vesicle-mediated transport Hs biological process
plasma membrane organization Hs biological process
cytoskeleton organization Hs biological process
axon guidance Hs biological process
synapse assembly Hs biological process
spectrin Hs cellular component
postsynaptic density Hs cellular component
spectrin-associated cytoskeleton Hs cellular component
actin cytoskeleton Hs cellular component
membrane Hs cellular component
vesicle-mediated transport Hs biological process
apical plasma membrane Hs cellular component
antigen processing and presentation of exogenous peptide antigen via MHC class II Hs biological process
cell junction Hs cellular component
ankyrin binding Hs molecular function
adult behavior Hs biological process
axolemma Hs cellular component
cortical cytoskeleton Hs cellular component
intrinsic component of the cytoplasmic side of the plasma membrane Hs cellular component
M band Hs cellular component
cuticular plate Hs cellular component
macromolecular complex Hs cellular component
multicellular organism growth Hs biological process
Golgi to plasma membrane protein transport Hs biological process
neuronal cell body Hs cellular component
cadherin binding Hs molecular function
actin filament binding Hs molecular function
GTPase binding Hs molecular function
actin filament capping Hs biological process
regulation of molecular function Hs biological process
extracellular exosome Hs cellular component
membrane assembly Hs biological process
protein localization to plasma membrane Hs biological process
regulation of protein localization to plasma membrane Hs biological process
positive regulation of protein localization to plasma membrane Hs biological process
regulation of sodium ion transport Hs biological process
adherens junction Hs cellular component
cytoskeletal anchoring at plasma membrane Hs biological process
axonogenesis Hs biological process
sensory perception of sound Hs biological process
adult walking behavior Hs biological process
fertilization Hs biological process
negative regulation of heart rate Hs biological process
intercalated disc Hs cellular component
nuclear matrix Hs cellular component
PML body Hs cellular component
transmission of nerve impulse Hs biological process
phosphatase binding Hs molecular function
central nervous system projection neuron axonogenesis Hs biological process
reproductive process Hs biological process
axon Hs cellular component
spectrin binding Hs molecular function
node of Ranvier Hs cellular component
paranode region of axon Hs cellular component
cellular protein localization Hs biological process
positive regulation of multicellular organism growth Hs biological process
axon initial segment Hs cellular component
axon hillock Hs cellular component
clustering of voltage-gated sodium channels Hs biological process
cardiac conduction Hs biological process
cell body fiber Hs cellular component

GO (Blast)

35 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 2477 0.0
actin binding Hs molecular function 2477 0.0
Ras guanyl-nucleotide exchange factor activity Hs molecular function 2477 0.0
structural constituent of cytoskeleton Hs molecular function 2477 0.0
protein binding Hs molecular function 2477 0.0
calmodulin binding Hs molecular function 2477 0.0
phospholipid binding Hs molecular function 2477 0.0
extracellular space Hs cellular component 2130 0.0
nucleus Hs cellular component 2477 0.0
nucleolus Hs cellular component 2477 0.0
cytoplasm Hs cellular component 2477 0.0
Golgi apparatus Hs cellular component 2153 0.0
cytosol Hs cellular component 2477 0.0
cytoskeleton Hs cellular component 2477 0.0
plasma membrane Hs cellular component 2477 0.0
cell cortex Hs cellular component 2153 0.0
spectrin Hs cellular component 2477 0.0
postsynaptic density Hs cellular component 2477 0.0
spectrin-associated cytoskeleton Hs cellular component 2477 0.0
actin cytoskeleton Hs cellular component 2153 0.0
membrane Hs cellular component 2477 0.0
apical plasma membrane Hs cellular component 2130 0.0
cell junction Hs cellular component 2130 0.0
ankyrin binding Hs molecular function 2477 0.0
axolemma Hs cellular component 2477 0.0
cortical cytoskeleton Hs cellular component 2477 0.0
intrinsic component of the cytoplasmic side of the plasma membrane Hs cellular component 2153 0.0
M band Hs cellular component 2477 0.0
cuticular plate Hs cellular component 2477 0.0
macromolecular complex Hs cellular component 2153 0.0
neuronal cell body Hs cellular component 2130 0.0
cadherin binding Hs molecular function 2477 0.0
actin filament binding Hs molecular function 2153 0.0
GTPase binding Hs molecular function 2477 0.0
extracellular exosome Hs cellular component 2477 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
actin binding PIRSF molecular function 0.0
structural constituent of cytoskeleton PIRSF molecular function 0.0
protein binding Pfam molecular function 1.8E-17
phospholipid binding PRINTS molecular function 1.1E-20
spectrin PIRSF cellular component 0.0

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