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Gene Card

Best human hits

VPS25

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005664

Gene Model ID

KH2012:KH.C3.481

Location

KhC3:2754400..2755694

Transcript Models and Sequences

  KH2012:KH.C3.481.v1.A.SL1-1
KH2012:KH.C3.481.v1.A.SL2-1
KH2012:KH.C3.481.v1.A.SL3-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000023783
Collections

Gateway full ORF

2 results

cien82698

Plate: VES83_H08

cien213165

Plate: VES103_P09

Gene collection 1 (N. Satoh)

2 results

cieg024k12

Plate: R1CiGC19o08

cieg054j24

Plate: R1CiGC24a18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
ESCRT-II_cplx_Vps25-sub_N Gene3D ESCRT-II complex, Vps25 subunit, N-terminal winged helix
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
ESCRT-II_cplx_Vps25-sub PANTHER ESCRT-II complex, Vps25 subunit
ESCRT-II_cplx_Vps25-sub Pfam ESCRT-II complex, Vps25 subunit

GOSlim

29 results

GO Term Annotation Origin Type
structural molecule activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
endosome Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
protein transport Orthology biological process
membrane Orthology cellular component
protein homodimerization activity Orthology molecular function
protein N-terminus binding Orthology molecular function
extracellular exosome Orthology cellular component
membrane part Orthology cellular component
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
macromolecular complex Orthology cellular component
cell surface receptor signaling pathway Orthology biological process
transmembrane signaling receptor activity Orthology molecular function
regulation of catalytic activity Orthology biological process
protein kinase activity Orthology molecular function
negative regulation of signal transduction Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
vacuole Orthology cellular component
proteolysis Orthology biological process
establishment of protein localization to organelle Orthology biological process

GO (Orthology)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ESCRT II complex Hs cellular component
structural molecule activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
endosome Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
negative regulation of epidermal growth factor-activated receptor activity Hs biological process
endosome membrane Hs cellular component
protein transport Hs biological process
membrane Hs cellular component
endosomal transport Hs biological process
macroautophagy Hs biological process
multivesicular body assembly Hs biological process
protein homodimerization activity Hs molecular function
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Hs biological process
protein N-terminus binding Hs molecular function
extracellular exosome Hs cellular component
multivesicular body sorting pathway Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ESCRT II complex Hs cellular component 173 7.21e-56
structural molecule activity Hs molecular function 173 7.21e-56
protein binding Hs molecular function 173 7.21e-56
nucleus Hs cellular component 173 7.21e-56
nucleoplasm Hs cellular component 173 7.21e-56
cytoplasm Hs cellular component 173 7.21e-56
endosome Hs cellular component 173 7.21e-56
cytosol Hs cellular component 173 7.21e-56
endosome membrane Hs cellular component 173 7.21e-56
membrane Hs cellular component 173 7.21e-56
protein homodimerization activity Hs molecular function 173 7.21e-56
protein N-terminus binding Hs molecular function 173 7.21e-56
extracellular exosome Hs cellular component 173 7.21e-56

GO (InterProScan)

2 results

GO Term Analysis Type e-value
ESCRT II complex PANTHER cellular component 1.8E-64
multivesicular body sorting pathway PANTHER biological process 1.8E-64

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