Aniseed - Gene card

Gene 'Phfumi.CG.MTP2014.S1...' >

Gene Card

Best human hits

AC068533.4; CRCP; FBXO41

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005675

Gene Model ID

KH2012:KH.C3.491

Location

KhC3:3847035..3857499

Transcript Models and Sequences

KH2012:KH.C3.491.v1.C.SL2-1
KH2012:KH.C3.491.v2.C.nonSL4-1
KH2012:KH.C3.491.v2.C.nonSL5-1
KH2012:KH.C3.491.v2.C.nonSL7-1
KH2012:KH.C3.491.v2.C.nonSL8-1
KH2012:KH.C3.491.v2.C.nonSL9-1
KH2012:KH.C3.491.v2.C.SL1-1
KH2012:KH.C3.491.v2.C.SL6-1
KH2012:KH.C3.491.v3.C.SL2-1
KH2012:KH.C3.491.v4.C.ND3-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000003588
ENSEMBL	ENSCING00000012656
NCBI Reference Sequence	NM_001032603.1

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

2 results

cilv007h21

Plate: R1CiGC25h01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
F-box_dom	ProSiteProfiles	F-box domain
F-box-like_dom_sf	SUPERFAMILY	F-box-like domain superfamily
Znf_C2H2_type	SMART	Zinc finger C2H2-type
LRR_dom_sf	Gene3D	Leucine-rich repeat domain superfamily
F-box_dom	Pfam	F-box domain
HRDC-like_sf	SUPERFAMILY	HRDC-like superfamily
RNA_pol_II_Rpb4	Pfam	RNA polymerase II, Rpb4
Rpb4/RPC9_sf	Gene3D	Rpb4/RPC9 superfamily
RNA_pol_II_Rpb4_core	SMART	RNA polymerase II, Rpb4, core
Prot_kinase_dom	ProSiteProfiles	Protein kinase domain
Kinase-like_dom_sf	SUPERFAMILY	Protein kinase-like domain superfamily
Ser/Thr_kinase_AS	ProSitePatterns	Serine/threonine-protein kinase, active site

GOSlim

29 results

GO Term	Annotation Origin	Type
nucleotide binding	Blast	molecular function
protein polyubiquitination	Orthology	biological process
catalytic activity	Blast	molecular function
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Orthology	cellular component
plasma membrane	Blast	cellular component
transcription, DNA-templated	Blast	biological process
membrane	Blast	cellular component
cellular metabolic process	InterProScan	biological process
nucleic acid binding	InterProScan	molecular function
protein kinase activity	InterProScan	molecular function
ATP binding	InterProScan	molecular function
protein phosphorylation	InterProScan	biological process
cellular protein modification process	Orthology	biological process
nuclear lumen	Blast	cellular component
transferase activity, transferring phosphorus-containing groups	Blast	molecular function
intracellular non-membrane-bounded organelle	Blast	cellular component
binding	Blast	molecular function
G-protein coupled receptor activity	Blast	molecular function
cytoplasmic vesicle	Blast	cellular component
endomembrane system	Blast	cellular component
RNA biosynthetic process	Blast	biological process
nuclear part	Blast	cellular component
macromolecular complex	Blast	cellular component
intracellular part	Blast	cellular component

GO (Orthology)

5 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein polyubiquitination	Hs	biological process
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
cytosol	Hs	cellular component
post-translational protein modification	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	97.8	3.78e-22
RNA polymerase III activity	Hs	molecular function	95.5	6.66e-23
calcitonin gene-related peptide receptor activity	Hs	molecular function	95.5	6.66e-23
acrosomal vesicle	Hs	cellular component	95.5	6.66e-23
catalytic activity	Hs	molecular function	97.8	3.78e-22
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function	97.8	3.78e-22
argininosuccinate lyase activity	Hs	molecular function	97.8	3.78e-22
ubiquitin-protein transferase activity	Hs	molecular function	189	4.12e-50
protein binding	Hs	molecular function	189	4.12e-50
nucleus	Hs	cellular component	95.5	6.66e-23
nucleoplasm	Hs	cellular component	95.5	6.66e-23
DNA-directed RNA polymerase III complex	Hs	cellular component	95.5	6.66e-23
cytoplasm	Hs	cellular component	97.8	3.78e-22
cytosol	Hs	cellular component	189	4.12e-50
plasma membrane	Hs	cellular component	95.5	6.66e-23
DNA polymerase III complex	Hs	cellular component	95.5	6.66e-23
membrane	Hs	cellular component	95.5	6.66e-23

GO (InterProScan)

10 results

GO Term	Analysis	Type	e-value
nucleotide binding	SUPERFAMILY	molecular function	1.05E-26
catalytic activity	SUPERFAMILY	molecular function	1.05E-26
DNA-directed 5'-3' RNA polymerase activity	Pfam	molecular function	5.7E-26
protein binding	Pfam	molecular function	6.4E-9
transcription, DNA-templated	Pfam	biological process	5.7E-26
cellular metabolic process	SUPERFAMILY	biological process	1.05E-26
nucleic acid binding	SMART	molecular function	0.0093
protein kinase activity	ProSiteProfiles	molecular function	8.683
ATP binding	ProSiteProfiles	molecular function	8.683
protein phosphorylation	ProSiteProfiles	biological process	8.683