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Gene Card

Best human hits

TUBA1C; TUBA3C; TUBA3D

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005939

Gene Model ID

KH2012:KH.C3.736

Location

KhC3:5588956..5592836

Transcript Models and Sequences

  KH2012:KH.C3.736.v1.A.nonSL10-1
KH2012:KH.C3.736.v1.A.nonSL11-1
KH2012:KH.C3.736.v1.A.nonSL12-1
KH2012:KH.C3.736.v1.A.nonSL13-1
KH2012:KH.C3.736.v1.A.nonSL14-1
KH2012:KH.C3.736.v1.A.nonSL2-1
KH2012:KH.C3.736.v1.A.nonSL3-1
KH2012:KH.C3.736.v1.A.nonSL4-1
KH2012:KH.C3.736.v1.A.nonSL5-1
KH2012:KH.C3.736.v1.A.nonSL6-1
KH2012:KH.C3.736.v1.A.nonSL7-1
KH2012:KH.C3.736.v1.A.nonSL8-1
KH2012:KH.C3.736.v1.A.nonSL9-1
KH2012:KH.C3.736.v1.R.ND1-1

External Database Gene Card

External database links

No result

Collections

Gene collection 1 (N. Satoh)

2 results

cieg022e02

Plate: R1CiGC18p02

cicl067a06

Plate: R1CiGC39e18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Tubulin_FtsZ_GTPase Pfam Tubulin/FtsZ, GTPase domain
Tub_FtsZ_C SUPERFAMILY Tubulin/FtsZ, C-terminal
Tubulin_C Gene3D Tubulin, C-terminal
Tubulin PANTHER Tubulin
Tubulin PRINTS Tubulin
Tubulin_FtsZ_GTPase SMART Tubulin/FtsZ, GTPase domain
Tubulin_CS ProSitePatterns Tubulin, conserved site
Alpha_tubulin PRINTS Alpha tubulin
Tubulin/FtsZ_C_sf Gene3D Tubulin/FtsZ, C-terminal domain superfamily
Tubulin/FtsZ_2-layer-sand-dom Pfam Tubulin/FtsZ, 2-layer sandwich domain
Tubulin/FtsZ_GTPase_sf Gene3D Tubulin/FtsZ, GTPase domain superfamily
Tubulin/FtsZ_2-layer-sand-dom SMART Tubulin/FtsZ, 2-layer sandwich domain
Tubulin/FtsZ_GTPase_sf SUPERFAMILY Tubulin/FtsZ, GTPase domain superfamily

GOSlim

13 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
GTPase activity Blast molecular function
structural molecule activity Blast molecular function
protein binding Blast molecular function
GTP binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
cytoskeleton Blast cellular component
microtubule Blast cellular component
microtubule-based process InterProScan biological process
microtubule cytoskeleton Blast cellular component
vesicle Blast cellular component
organelle organization Blast biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 870 0.0
GTPase activity Hs molecular function 870 0.0
structural molecule activity Hs molecular function 869 0.0
structural constituent of cytoskeleton Hs molecular function 870 0.0
protein binding Hs molecular function 870 0.0
GTP binding Hs molecular function 870 0.0
nucleus Hs cellular component 870 0.0
cytoplasm Hs cellular component 870 0.0
cytoskeleton Hs cellular component 870 0.0
microtubule Hs cellular component 870 0.0
microtubule cytoskeleton Hs cellular component 870 0.0
vesicle Hs cellular component 869 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
GTPase activity SMART molecular function 4.9E-81
structural constituent of cytoskeleton PRINTS molecular function 1.4E-119
GTP binding PRINTS molecular function 1.4E-119
microtubule PANTHER cellular component 0.0
microtubule-based process PANTHER biological process 0.0

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