Aniseed - Gene card

Gene Card

Best human hits

PHLDB1; PHLDB2; PHLDB3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005942

Gene Model ID

KH2012:KH.C3.74

Location

KhC3:5978753..5995024

Transcript Models and Sequences

KH2012:KH.C3.74.v1.C.SL1-1
KH2012:KH.C3.74.v1.C.SL3-1
KH2012:KH.C3.74.v2.C.SL2-1
KH2012:KH.C3.74.v3.C.SL1-1
KH2012:KH.C3.74.v3.C.SL3-1
KH2012:KH.C3.74.v4.B.SL1-3
KH2012:KH.C3.74.v4.B.SL3-3
KH2012:KH.C3.74.v5.B.SL2-3
KH2012:KH.C3.74.v6.C.SL2-2
KH2012:KH.C3.74.v7.C.SL2-1
KH2012:KH.C3.74.v8.C.SL1-2
KH2012:KH.C3.74.v8.C.SL3-2

External Database Gene Card

External database links

7 results

Database	Gene ID
ENSEMBL	ENSCING00000020905
ENSEMBL	ENSCING00000025076
NCBI Reference Sequence	XM_002128501.3
NCBI Reference Sequence	XM_018811335.1
NCBI Reference Sequence	XM_018811336.1
NCBI Reference Sequence	XM_018811337.1
NCBI Reference Sequence	XM_018811338.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

citb078b17

Plate: R1CiGC46k24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
PH_domain	Pfam	Pleckstrin homology domain
PH_domain	ProSiteProfiles	Pleckstrin homology domain
PH_domain	SMART	Pleckstrin homology domain
PH-like_dom_sf	Gene3D	PH-like domain superfamily

GOSlim

21 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Orthology	cellular component
focal adhesion	Orthology	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
enzyme binding	Blast	molecular function
cell leading edge	Orthology	cellular component
establishment of protein localization	Orthology	biological process
microtubule-based process	Orthology	biological process
organelle organization	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
multicellular organism development	Orthology	biological process
animal organ development	Orthology	biological process
cell differentiation	Orthology	biological process
cytoskeleton	Orthology	cellular component
cell periphery	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
cell adhesion molecule binding	Orthology	molecular function
cell adhesion	Orthology	biological process

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
microtubule cytoskeleton organization	Hs	biological process
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
focal adhesion	Hs	cellular component
regulation of gastrulation	Hs	biological process
regulation of epithelial to mesenchymal transition	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
cell leading edge	Hs	cellular component
intermediate filament cytoskeleton	Hs	cellular component
basal cortex	Hs	cellular component
establishment of protein localization	Hs	biological process
cadherin binding	Hs	molecular function
negative regulation of stress fiber assembly	Hs	biological process
negative regulation of focal adhesion assembly	Hs	biological process
regulation of microtubule cytoskeleton organization	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	276	3.14e-76
cytoplasm	Hs	cellular component	276	3.14e-76
cytosol	Hs	cellular component	276	3.14e-76
plasma membrane	Hs	cellular component	276	3.14e-76
focal adhesion	Hs	cellular component	276	3.14e-76
membrane	Hs	cellular component	276	3.14e-76
integral component of membrane	Hs	cellular component	276	3.14e-76
enzyme binding	Hs	molecular function	205	1.57e-55
cell leading edge	Hs	cellular component	276	3.14e-76
intermediate filament cytoskeleton	Hs	cellular component	276	3.14e-76
basal cortex	Hs	cellular component	276	3.14e-76
cadherin binding	Hs	molecular function	276	3.14e-76

GO (InterProScan)