Login
Help

GENE CARD

Submit your Data

  1. > 
  2. Gene 'Cisavi.CG.ENS81.R26....' > 

Gene Card

Best human hits

TBX21; TBX4; TBX5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005978

Gene Model ID

KH2012:KH.C3.773

Location

KhC3:1442970..1447966

Transcript Models and Sequences

  KH2012:KH.C3.773.v1.A.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001721
NCBI Reference Sequence NM_001032417.1
Collections

Gateway full ORF

2 results

cien64647

Plate: VES80_L09

cien124245

Plate: VES89_P16

Gene collection 1 (N. Satoh)

1 result

cieg057b14

Plate: R1CiGC24p01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
TF_T-box SMART Transcription factor, T-box
TF_T-box PANTHER Transcription factor, T-box
T-box_sf Gene3D T-box superfamily
TF_T-box PRINTS Transcription factor, T-box
TF_T-box ProSiteProfiles Transcription factor, T-box
TF_T-box Pfam Transcription factor, T-box
p53-like_TF_DNA-bd SUPERFAMILY p53-like transcription factor, DNA-binding

GOSlim

17 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Blast biological process
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
transcription factor binding Blast molecular function
macromolecular complex Blast cellular component
neuronal cell body Blast cellular component
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 167 2.59e-44
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 167 2.59e-44
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 168 2.32e-44
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 166 1.25e-43
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 167 2.59e-44
DNA binding Hs molecular function 168 2.32e-44
transcription factor activity, sequence-specific DNA binding Hs molecular function 168 2.32e-44
protein binding Hs molecular function 167 2.59e-44
nucleus Hs cellular component 168 2.32e-44
nucleoplasm Hs cellular component 167 2.59e-44
cytoplasm Hs cellular component 167 2.59e-44
transcription factor binding Hs molecular function 167 2.59e-44
macromolecular complex Hs cellular component 167 2.59e-44
protein-DNA complex Hs cellular component 167 2.59e-44
neuronal cell body Hs cellular component 166 1.25e-43
sequence-specific DNA binding Hs molecular function 167 2.59e-44
transcription regulatory region DNA binding Hs molecular function 166 1.25e-43

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 2.6E-88
nucleus PANTHER cellular component 2.6E-88
regulation of transcription, DNA-templated PANTHER biological process 2.6E-88

Back to Top