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GENE CARD

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Gene Card

Best human hits

DES; GFAP; VIM

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005986

Gene Model ID

KH2012:KH.C3.781

Location

KhC3:5307356..5311913

Transcript Models and Sequences

  KH2012:KH.C3.781.v1.A.SL1-2
KH2012:KH.C3.781.v2.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000008941
NCBI Reference Sequence XM_002119100.4
NCBI Reference Sequence XM_009859773.2
Collections

Gateway full ORF

2 results

cima84537

Plate: VES56_E20

cima856684

Plate: VES63_K23

Gene collection 1 (N. Satoh)

2 results

cilv005k22

Plate: R1CiGC25i04

ciad019l04

Plate: R1CiGC03i07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
IF SMART Intermediate filament protein
Keratin_I PRINTS Keratin, type I
IF PANTHER Intermediate filament protein
IF Pfam Intermediate filament protein
Intermediate_filament_CS ProSitePatterns Intermediate filament protein, conserved site

GOSlim

38 results

GO Term Annotation Origin Type
integrin binding Blast molecular function
structural molecule activity Blast molecular function
protein binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
cytoplasm Blast cellular component
lysosome Blast cellular component
peroxisome Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
protein C-terminus binding Blast molecular function
cytoskeletal protein binding Blast molecular function
membrane Blast cellular component
kinase binding Blast molecular function
cell leading edge Blast cellular component
identical protein binding Blast molecular function
cell projection Blast cellular component
neuron projection Blast cellular component
myelin sheath Blast cellular component
cell body Blast cellular component
extracellular exosome Blast cellular component
RNA binding Blast molecular function
organelle organization Blast biological process
macromolecular complex Blast cellular component
cytoskeletal part Blast cellular component
cytoplasmic part Blast cellular component
cell junction Blast cellular component
adherens junction Blast cellular component
organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
synapse Blast cellular component
cytoplasmic vesicle Blast cellular component
plasma membrane region Blast cellular component
membrane part Blast cellular component
lysosomal membrane Blast cellular component
macromolecular complex binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

47 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
double-stranded RNA binding Hs molecular function 286 7.06e-92
integrin binding Hs molecular function 249 2.44e-78
structural molecule activity Hs molecular function 286 7.06e-92
structural constituent of cytoskeleton Hs molecular function 286 7.06e-92
structural constituent of eye lens Hs molecular function 286 7.06e-92
protein binding Hs molecular function 286 7.06e-92
intracellular Hs cellular component 249 2.44e-78
nucleus Hs cellular component 231 1.09e-70
cytoplasm Hs cellular component 286 7.06e-92
lysosome Hs cellular component 249 2.44e-78
peroxisome Hs cellular component 286 7.06e-92
cytosol Hs cellular component 286 7.06e-92
polysome Hs cellular component 286 7.06e-92
cytoskeleton Hs cellular component 286 7.06e-92
intermediate filament Hs cellular component 286 7.06e-92
neurofilament Hs cellular component 249 2.44e-78
plasma membrane Hs cellular component 286 7.06e-92
cell-cell junction Hs cellular component 231 1.09e-70
fascia adherens Hs cellular component 231 1.09e-70
focal adhesion Hs cellular component 286 7.06e-92
protein C-terminus binding Hs molecular function 286 7.06e-92
cytoskeletal protein binding Hs molecular function 231 1.09e-70
intercalated disc Hs cellular component 231 1.09e-70
membrane Hs cellular component 249 2.44e-78
kinase binding Hs molecular function 249 2.44e-78
protein domain specific binding Hs molecular function 286 7.06e-92
Z disc Hs cellular component 231 1.09e-70
intracellular ribonucleoprotein complex Hs cellular component 286 7.06e-92
cell leading edge Hs cellular component 286 7.06e-92
neuromuscular junction Hs cellular component 231 1.09e-70
sarcolemma Hs cellular component 231 1.09e-70
identical protein binding Hs molecular function 286 7.06e-92
cell projection Hs cellular component 286 7.06e-92
neuron projection Hs cellular component 286 7.06e-92
myelin sheath Hs cellular component 249 2.44e-78
contractile fiber Hs cellular component 231 1.09e-70
cell body Hs cellular component 249 2.44e-78
intermediate filament cytoskeleton Hs cellular component 249 2.44e-78
phagocytic vesicle Hs cellular component 286 7.06e-92
extracellular exosome Hs cellular component 286 7.06e-92
scaffold protein binding Hs molecular function 286 7.06e-92
glial cell projection Hs cellular component 249 2.44e-78
astrocyte projection Hs cellular component 249 2.44e-78
astrocyte end-foot Hs cellular component 249 2.44e-78
cardiac myofibril Hs cellular component 231 1.09e-70
cytoplasmic side of lysosomal membrane Hs cellular component 249 2.44e-78
keratin filament binding Hs molecular function 286 7.06e-92

GO (InterProScan)

2 results

GO Term Analysis Type e-value
structural molecule activity SMART molecular function 3.2E-115
intermediate filament SMART cellular component 3.2E-115

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