Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 
  3. > 
  4. > 

Gene Card

Best human hits

LRPAP1; PSD

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006055

Gene Model ID

KH2012:KH.C3.845

Location

KhC3:6698859..6703795

Transcript Models and Sequences

  KH2012:KH.C3.845.v1.C.nonSL2-1
KH2012:KH.C3.845.v1.C.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000016102
Collections

Gateway full ORF

4 results

cien79453

Plate: VES82_L18

cien82463

Plate: VES83_M07

cien141297

Plate: VES92_D08

cien215298

Plate: VES103_C17

Gene collection 1 (N. Satoh)

3 results

cicl002n07

Plate: R1CiGC08m20

cicl060a06

Plate: R1CiGC15m01

cits048g21

Plate: R1CiGC35f08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
RAP_sf Gene3D RAP domain superfamily
RAP_sf SUPERFAMILY RAP domain superfamily
MG_RAP_rcpt_1 Pfam Alpha-2-macroglobulin receptor-associated protein, domain 1
A2-macroglobuin_RAP PANTHER Alpha-2-macroglobulin receptor-associated protein
RAP_D3 CDD Alpha-2-macroglobulin RAP, domain 3
Alpha_2_MRAP_C Pfam Alpha-2-macroglobulin RAP, C-terminal
MG_RAP_rcpt_1 CDD Alpha-2-macroglobulin receptor-associated protein, domain 1

GOSlim

40 results

GO Term Annotation Origin Type
signal transducer activity Blast molecular function
receptor binding Orthology molecular function
protein binding Orthology molecular function
extracellular region Orthology cellular component
cytoplasm Orthology cellular component
endosome Orthology cellular component
endoplasmic reticulum Orthology cellular component
Golgi apparatus Orthology cellular component
plasma membrane Orthology cellular component
cell surface Orthology cellular component
membrane Blast cellular component
vesicle Orthology cellular component
cell projection Blast cellular component
negative regulation of cell death Orthology biological process
regulation of molecular function Orthology biological process
binding Orthology molecular function
cytoplasmic part Orthology cellular component
intracellular membrane-bounded organelle Orthology cellular component
Golgi apparatus part Orthology cellular component
intracellular organelle lumen Orthology cellular component
anion binding Orthology molecular function
carbohydrate derivative binding Orthology molecular function
intracellular organelle part Orthology cellular component
enzyme binding Orthology molecular function
molecular function regulator Orthology molecular function
regulation of signal transduction Orthology biological process
signaling receptor activity Orthology molecular function
endoplasmic reticulum lumen Orthology cellular component
membrane organization Orthology biological process
organelle organization Orthology biological process
negative regulation of signal transduction Orthology biological process
organelle Blast cellular component
postsynapse Blast cellular component
neuron part Blast cellular component
plasma membrane region Blast cellular component
cell projection membrane Blast cellular component
cell leading edge Blast cellular component
membrane part Blast cellular component
whole membrane Blast cellular component
bounding membrane of organelle Blast cellular component

GO (Orthology)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
amyloid-beta binding Hs molecular function
receptor binding Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
cytoplasm Hs cellular component
endosome Hs cellular component
endoplasmic reticulum Hs cellular component
rough endoplasmic reticulum Hs cellular component
endoplasmic reticulum-Golgi intermediate compartment Hs cellular component
Golgi apparatus Hs cellular component
Golgi lumen Hs cellular component
cis-Golgi network Hs cellular component
plasma membrane Hs cellular component
heparin binding Hs molecular function
cell surface Hs cellular component
endosome lumen Hs cellular component
vesicle Hs cellular component
negative regulation of protein binding Hs biological process
lipase binding Hs molecular function
transcytosis Hs biological process
receptor antagonist activity Hs molecular function
rough endoplasmic reticulum lumen Hs cellular component
regulation of receptor-mediated endocytosis Hs biological process
low-density lipoprotein particle receptor binding Hs molecular function
negative regulation of cell death Hs biological process
very-low-density lipoprotein particle receptor binding Hs molecular function
extracellular negative regulation of signal transduction Hs biological process

GO (Blast)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
amyloid-beta binding Hs molecular function 146 5.25e-41
signal transducer activity Hs molecular function 40.4 0.001
guanyl-nucleotide exchange factor activity Hs molecular function 40.4 0.001
ARF guanyl-nucleotide exchange factor activity Hs molecular function 40.4 0.001
receptor binding Hs molecular function 146 5.25e-41
protein binding Hs molecular function 146 5.25e-41
phospholipid binding Hs molecular function 40.4 0.001
extracellular region Hs cellular component 146 5.25e-41
cytoplasm Hs cellular component 146 5.25e-41
endosome Hs cellular component 146 5.25e-41
endoplasmic reticulum Hs cellular component 146 5.25e-41
rough endoplasmic reticulum Hs cellular component 146 5.25e-41
endoplasmic reticulum-Golgi intermediate compartment Hs cellular component 146 5.25e-41
Golgi apparatus Hs cellular component 146 5.25e-41
Golgi lumen Hs cellular component 146 5.25e-41
cis-Golgi network Hs cellular component 146 5.25e-41
plasma membrane Hs cellular component 146 5.25e-41
heparin binding Hs molecular function 146 5.25e-41
cell surface Hs cellular component 146 5.25e-41
postsynaptic density Hs cellular component 40.4 0.001
membrane Hs cellular component 40.4 0.001
endosome lumen Hs cellular component 146 5.25e-41
vesicle Hs cellular component 146 5.25e-41
cleavage furrow Hs cellular component 40.4 0.001
ruffle membrane Hs cellular component 40.4 0.001
lipase binding Hs molecular function 146 5.25e-41
cell projection Hs cellular component 40.4 0.001
dendritic spine Hs cellular component 40.4 0.001
receptor antagonist activity Hs molecular function 146 5.25e-41
rough endoplasmic reticulum lumen Hs cellular component 146 5.25e-41
low-density lipoprotein particle receptor binding Hs molecular function 146 5.25e-41
very-low-density lipoprotein particle receptor binding Hs molecular function 146 5.25e-41
extrinsic component of postsynaptic endosome membrane Hs cellular component 40.4 0.001

GO (InterProScan)

4 results

GO Term Analysis Type e-value
endoplasmic reticulum Pfam cellular component 1.5E-57
heparin binding Pfam molecular function 1.5E-57
receptor antagonist activity PANTHER molecular function 2.0E-93
low-density lipoprotein particle receptor binding PANTHER molecular function 2.0E-93

Back to Top