Gene Card
Best human hits
PATL1; PATL2
Unique Gene ID
Cirobu.g00006103
Gene Model ID
KH2012:KH.C3.89
Location
KhC3:3248230..3259523
Transcript Models and Sequences
External database links
2 results
| Database | Gene ID |
|---|---|
| NCBI Reference Sequence | XM_002127203.4 |
| NCBI Reference Sequence | XM_009859718.1 |
Gateway full ORF
2 results
cien139063
Plate: VES92_H02
cien214461
Plate: VES103_M14
Gene collection 1 (N. Satoh)
2 results
cieg029f02
Plate: R1CiGC20e04
citb094g02
Plate: R1CiGC46d16
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
1 result
| IPR Term | Analysis | Definition |
|---|---|---|
| Topo_II-assoc_PAT1 | Pfam | Topoisomerase II-associated protein PAT1 |
GOSlim
13 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| cytoplasm | Orthology | cellular component |
| cytosol | Orthology | cellular component |
| nuclear speck | Orthology | cellular component |
| nuclear-transcribed mRNA catabolic process | Orthology | biological process |
| cytoplasmic part | Orthology | cellular component |
| intracellular non-membrane-bounded organelle | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| nuclear body | Orthology | cellular component |
| negative regulation of gene expression | Orthology | biological process |
| intracellular part | Orthology | cellular component |
GO (Orthology)
18 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| deadenylation-dependent decapping of nuclear-transcribed mRNA | Hs | biological process |
| P-body | Hs | cellular component |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| cytosol | Hs | cellular component |
| poly(U) RNA binding | Hs | molecular function |
| negative regulation of cytoplasmic mRNA processing body assembly | Hs | biological process |
| PML body | Hs | cellular component |
| nuclear speck | Hs | cellular component |
| negative regulation of translation | Hs | biological process |
| CCR4-NOT complex | Hs | cellular component |
| intracellular ribonucleoprotein complex | Hs | cellular component |
| cytoplasmic mRNA processing body assembly | Hs | biological process |
| poly(G) binding | Hs | molecular function |
| cytoplasmic ribonucleoprotein granule | Hs | cellular component |
| exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | Hs | biological process |
GO (Blast)
13 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| P-body | Hs | cellular component | 173 | 9.09e-45 |
| RNA binding | Hs | molecular function | 173 | 9.09e-45 |
| protein binding | Hs | molecular function | 173 | 9.09e-45 |
| nucleus | Hs | cellular component | 173 | 9.09e-45 |
| cytoplasm | Hs | cellular component | 173 | 9.09e-45 |
| cytosol | Hs | cellular component | 173 | 9.09e-45 |
| poly(U) RNA binding | Hs | molecular function | 173 | 9.09e-45 |
| PML body | Hs | cellular component | 173 | 9.09e-45 |
| nuclear speck | Hs | cellular component | 173 | 9.09e-45 |
| CCR4-NOT complex | Hs | cellular component | 173 | 9.09e-45 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 134 | 6.03e-33 |
| poly(G) binding | Hs | molecular function | 173 | 9.09e-45 |
| cytoplasmic ribonucleoprotein granule | Hs | cellular component | 173 | 9.09e-45 |
| GO Term | Analysis | Type | e-value |
|---|
