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GENE CARD

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Gene Card

Best human hits

CALM1; CALM2; CALM3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006158

Gene Model ID

KH2012:KH.C3.968

Location

KhC3:6659086..6661037

Transcript Models and Sequences

  KH2012:KH.C3.968.v1.A.nonSL1-1
KH2012:KH.C3.968.v1.A.nonSL6-1
KH2012:KH.C3.968.v1.A.SL3-1
KH2012:KH.C3.968.v2.A.ND2-1
KH2012:KH.C3.968.v2.A.SL4-1
KH2012:KH.C3.968.v2.A.SL5-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence NM_001032461.1
Collections

Gateway full ORF

2 results

cima88202

Plate: VES57_H12

cima874270

Plate: VES67_M11

Gene collection 1 (N. Satoh)

1 result

citb5b18

Plate: R1CiGC29c18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
EF_hand_dom ProSiteProfiles EF-hand domain
EF-hand-dom_pair SUPERFAMILY EF-hand domain pair
EF_Hand_1_Ca_BS ProSitePatterns EF-Hand 1, calcium-binding site
EF_hand_dom Pfam EF-hand domain
EF_hand_dom CDD EF-hand domain
EF_hand_dom SMART EF-hand domain

GOSlim

35 results

GO Term Annotation Origin Type
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
centrosome Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
kinase activity Blast molecular function
protein kinase binding Blast molecular function
vesicle Blast cellular component
macromolecular complex Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
cytoskeletal part Blast cellular component
microtubule cytoskeleton Blast cellular component
enzyme binding Blast molecular function
molecular function regulator Blast molecular function
microtubule Blast cellular component
phosphotransferase activity, alcohol group as acceptor Blast molecular function
ion transport Blast biological process
transmembrane transport Blast biological process
metal ion transport Blast biological process
cytoplasmic part Blast cellular component
organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
cytoskeletal protein binding Blast molecular function
protein N-terminus binding Blast molecular function
integral component of membrane Blast cellular component
enzyme activator activity Blast molecular function
protein serine/threonine kinase activity Blast molecular function
protein dephosphorylation Blast biological process
regulation of cellular metabolic process Blast biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
spindle pole Hs cellular component 292 1.76e-103
Ras guanyl-nucleotide exchange factor activity Hs molecular function 290 7.76e-103
calcium ion binding Hs molecular function 292 1.76e-103
protein binding Hs molecular function 292 1.76e-103
extracellular region Hs cellular component 290 7.76e-103
nucleus Hs cellular component 292 1.76e-103
nucleoplasm Hs cellular component 290 7.76e-103
cytoplasm Hs cellular component 292 1.76e-103
centrosome Hs cellular component 292 1.76e-103
spindle Hs cellular component 292 1.76e-103
cytosol Hs cellular component 290 7.76e-103
cytoskeleton Hs cellular component 292 1.76e-103
spindle microtubule Hs cellular component 292 1.76e-103
plasma membrane Hs cellular component 292 1.76e-103
adenylate cyclase binding Hs molecular function 292 1.76e-103
inositol-1,4,5-trisphosphate 3-kinase activity Hs molecular function 290 7.76e-103
ligand-gated ion channel activity Hs molecular function 290 7.76e-103
kinase activity Hs molecular function 292 1.76e-103
calcium channel inhibitor activity Hs molecular function 290 7.76e-103
protein kinase binding Hs molecular function 292 1.76e-103
protein domain specific binding Hs molecular function 292 1.76e-103
sarcomere Hs cellular component 292 1.76e-103
titin binding Hs molecular function 292 1.76e-103
vesicle Hs cellular component 292 1.76e-103
N-terminal myristoylation domain binding Hs molecular function 292 1.76e-103
macromolecular complex Hs cellular component 292 1.76e-103
calcium channel complex Hs cellular component 292 1.76e-103
protein serine/threonine kinase activator activity Hs molecular function 292 1.76e-103
ion channel binding Hs molecular function 292 1.76e-103
metal ion binding Hs molecular function 292 1.76e-103
extracellular exosome Hs cellular component 292 1.76e-103
protein phosphatase activator activity Hs molecular function 292 1.76e-103
disordered domain specific binding Hs molecular function 292 1.76e-103
catalytic complex Hs cellular component 292 1.76e-103

GO (InterProScan)

1 result

GO Term Analysis Type e-value
calcium ion binding CDD molecular function 1.48567E-23

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