Aniseed - Gene card

Gene Card

Best human hits

ZFP36; ZFP36L1; ZFP36L2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006252

Gene Model ID

KH2012:KH.C4.182

Location

KhC4:111265..113675

Transcript Models and Sequences

KH2012:KH.C4.182.v1.A.nonSL1-1
KH2012:KH.C4.182.v1.A.nonSL2-1
KH2012:KH.C4.182.v1.A.nonSL4-1
KH2012:KH.C4.182.v1.R.nonSL3-1
KH2012:KH.C4.182.v2.A.SL5-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000014446
NCBI Reference Sequence	NM_001078411.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cilv007k07

Plate: R1CiGC25h13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

1 results

Ci-Znf(C3H) -212/24 REG00000312 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Znf_CCCH	Pfam	Zinc finger, CCCH-type
Znf_CCCH_sf	SUPERFAMILY	Zinc finger, CCCH-type superfamily
Znf_CCCH	ProSiteProfiles	Zinc finger, CCCH-type
Znf_CCCH	SMART	Zinc finger, CCCH-type
Tis11B_N	Pfam	Tis11B-like protein, N-terminal

GOSlim

14 results

GO Term	Annotation Origin	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
metal ion binding	Blast	molecular function
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
macromolecular complex	Blast	cellular component
intracellular part	Blast	cellular component
enzyme binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
P-body	Hs	cellular component	165	8.92e-48
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	165	8.92e-48
DNA binding	Hs	molecular function	165	8.92e-48
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	165	8.92e-48
RNA binding	Hs	molecular function	165	8.92e-48
mRNA binding	Hs	molecular function	165	8.92e-48
protein binding	Hs	molecular function	165	8.92e-48
nucleus	Hs	cellular component	165	8.92e-48
cytoplasm	Hs	cellular component	165	8.92e-48
cytosol	Hs	cellular component	165	8.92e-48
AU-rich element binding	Hs	molecular function	165	8.92e-48
CCR4-NOT complex	Hs	cellular component	110	2.29e-27
intracellular ribonucleoprotein complex	Hs	cellular component	165	8.92e-48
mRNA 3'-UTR AU-rich region binding	Hs	molecular function	165	8.92e-48
metal ion binding	Hs	molecular function	165	8.92e-48
RNA polymerase binding	Hs	molecular function	110	2.29e-27
14-3-3 protein binding	Hs	molecular function	165	8.92e-48
ribonucleoprotein complex	Hs	cellular component	110	2.29e-27

GO (InterProScan)