Aniseed - Gene card

Gene Card

Best human hits

TOMM40; TOMM40L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006270

Gene Model ID

KH2012:KH.C4.199

Location

KhC4:2284942..2290237

Transcript Models and Sequences

KH2012:KH.C4.199.v1.A.nonSL10-1
KH2012:KH.C4.199.v1.A.nonSL12-1
KH2012:KH.C4.199.v1.A.nonSL2-1
KH2012:KH.C4.199.v1.A.nonSL3-1
KH2012:KH.C4.199.v1.A.nonSL4-1
KH2012:KH.C4.199.v1.A.nonSL5-1
KH2012:KH.C4.199.v1.A.nonSL6-1
KH2012:KH.C4.199.v1.A.nonSL7-1
KH2012:KH.C4.199.v1.A.nonSL9-1
KH2012:KH.C4.199.v1.A.SL1-1
KH2012:KH.C4.199.v1.A.SL11-1
KH2012:KH.C4.199.v1.A.SL8-1

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000007630
NCBI Reference Sequence	XM_002131359.4
NCBI Reference Sequence	XM_002131369.3
NCBI Reference Sequence	XM_009859998.2
NCBI Reference Sequence	XM_009859999.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cicl045j04

Plate: R1CiGC13k09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Tom40	PANTHER	Tom40
Porin_Euk/Tom40	Pfam	Eukaryotic porin/Tom40
Tom40	CDD	Tom40

GOSlim

19 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
cytosol	Orthology	cellular component
ion transport	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transmembrane transport	Orthology	biological process
extracellular exosome	Orthology	cellular component
whole membrane	Orthology	cellular component
mitochondrial membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
membrane part	Orthology	cellular component
organelle organization	Orthology	biological process
establishment of protein localization to organelle	Orthology	biological process
protein targeting	Orthology	biological process
binding	Orthology	molecular function

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial outer membrane	Hs	cellular component
mitochondrial outer membrane translocase complex	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
cytosol	Hs	cellular component
protein targeting to mitochondrion	Hs	biological process
ion transport	Hs	biological process
protein transmembrane transporter activity	Hs	molecular function
protein transport	Hs	biological process
porin activity	Hs	molecular function
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
macroautophagy	Hs	biological process
protein import into mitochondrial matrix	Hs	biological process
mitochondrion targeting sequence binding	Hs	molecular function
integral component of mitochondrial outer membrane	Hs	cellular component
macromolecular complex	Hs	cellular component
pore complex	Hs	cellular component
transmembrane transport	Hs	biological process
extracellular exosome	Hs	cellular component
preprotein binding	Hs	molecular function

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	266	2.15e-87
mitochondrion	Hs	cellular component	266	2.15e-87
mitochondrial outer membrane	Hs	cellular component	266	2.15e-87
mitochondrial outer membrane translocase complex	Hs	cellular component	266	2.15e-87
mitochondrial inner membrane	Hs	cellular component	266	2.15e-87
cytosol	Hs	cellular component	266	2.15e-87
protein transmembrane transporter activity	Hs	molecular function	266	2.15e-87
porin activity	Hs	molecular function	266	2.15e-87
membrane	Hs	cellular component	266	2.15e-87
integral component of membrane	Hs	cellular component	266	2.15e-87
mitochondrion targeting sequence binding	Hs	molecular function	231	4.41e-74
integral component of mitochondrial outer membrane	Hs	cellular component	266	2.15e-87
macromolecular complex	Hs	cellular component	231	4.41e-74
pore complex	Hs	cellular component	266	2.15e-87
extracellular exosome	Hs	cellular component	266	2.15e-87
preprotein binding	Hs	molecular function	231	4.41e-74

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
mitochondrial outer membrane	CDD	cellular component	7.46182E-115
protein transmembrane transporter activity	CDD	molecular function	7.46182E-115
protein import into mitochondrial matrix	CDD	biological process	7.46182E-115
transmembrane transport	Pfam	biological process	8.3E-56