Aniseed - Gene card

Gene Card

Best human hits

CNN3; TAGLN2; TAGLN3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006305

Gene Model ID

KH2012:KH.C4.230

Location

KhC4:5110898..5113179

Transcript Models and Sequences

KH2012:KH.C4.230.v1.A.nonSL3-1
KH2012:KH.C4.230.v1.A.SL1-1
KH2012:KH.C4.230.v1.A.SL2-1
KH2012:KH.C4.230.v1.A.SL4-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002129861.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cilv013h23

Plate: R1CiGC26g11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Calponin_repeat	Pfam	Calponin repeat
SM22_calponin	PRINTS	Smooth muscle protein/calponin
CH-domain	CDD	Calponin homology domain
Calponin_repeat	ProSitePatterns	Calponin repeat
CH-domain	ProSiteProfiles	Calponin homology domain
Calponin_repeat	ProSiteProfiles	Calponin repeat
CH-domain	SMART	Calponin homology domain
CH-domain	Pfam	Calponin homology domain
CH_dom_sf	SUPERFAMILY	CH domain superfamily
CH_dom_sf	Gene3D	CH domain superfamily

GOSlim

28 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
actin binding	Orthology	molecular function
protein binding	Orthology	molecular function
calmodulin binding	Blast	molecular function
extracellular region	Orthology	cellular component
nucleus	Orthology	cellular component
cytosol	Orthology	cellular component
focal adhesion	Blast	cellular component
central nervous system development	Orthology	biological process
microtubule binding	Blast	molecular function
vesicle	Orthology	cellular component
neuronal cell body	Blast	cellular component
myelin sheath	Orthology	cellular component
actin filament binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
cytoplasm	Orthology	cellular component
membrane organization	Orthology	biological process
organelle organization	Orthology	biological process
anatomical structure development	Orthology	biological process
cell differentiation	Orthology	biological process
cell adhesion molecule binding	Orthology	molecular function
animal organ development	Orthology	biological process
adherens junction	Blast	cellular component
organelle	Blast	cellular component
postsynapse	Blast	cellular component
neuron part	Blast	cellular component
cytoskeleton	Blast	cellular component
cell adhesion	Blast	biological process

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
platelet degranulation	Hs	biological process
actin binding	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
nucleus	Hs	cellular component
cytosol	Hs	cellular component
central nervous system development	Hs	biological process
epithelial cell differentiation	Hs	biological process
vesicle	Hs	cellular component
myelin sheath	Hs	cellular component
cadherin binding	Hs	molecular function
actin filament binding	Hs	molecular function
extracellular exosome	Hs	cellular component
cytoplasm	Hs	cellular component
muscle organ development	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
actin binding	Hs	molecular function	147	2.74e-43
protein binding	Hs	molecular function	154	4.77e-47
calmodulin binding	Hs	molecular function	147	2.74e-43
extracellular region	Hs	cellular component	154	4.77e-47
nucleus	Hs	cellular component	147	1.66e-44
cytosol	Hs	cellular component	154	4.77e-47
cell-cell adherens junction	Hs	cellular component	147	2.74e-43
focal adhesion	Hs	cellular component	147	2.74e-43
microtubule binding	Hs	molecular function	147	2.74e-43
postsynaptic density	Hs	cellular component	147	2.74e-43
actin cytoskeleton	Hs	cellular component	147	2.74e-43
dendrite	Hs	cellular component	147	2.74e-43
vesicle	Hs	cellular component	154	4.77e-47
neuronal cell body	Hs	cellular component	147	2.74e-43
dendritic spine	Hs	cellular component	147	2.74e-43
myelin sheath	Hs	cellular component	147	1.66e-44
cadherin binding	Hs	molecular function	154	4.77e-47
actin filament binding	Hs	molecular function	147	1.66e-44
extracellular exosome	Hs	cellular component	154	4.77e-47
cadherin binding involved in cell-cell adhesion	Hs	molecular function	147	2.74e-43

GO (InterProScan)