Aniseed - Gene card

Gene Card

Best human hits

RIOK1; RIOK2; RIOK3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006330

Gene Model ID

KH2012:KH.C4.255

Location

KhC4:2107933..2110290

Transcript Models and Sequences

KH2012:KH.C4.255.v1.A.nonSL2-1
KH2012:KH.C4.255.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000019173

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cits036d08

Plate: R1CiGC34h19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
RIO_kinase	SMART	RIO kinase
RIO_kinase_CS	ProSitePatterns	RIO kinase, conserved site
Kinase-like_dom_sf	SUPERFAMILY	Protein kinase-like domain superfamily
Ser/Thr_kinase_Rio1	PIRSF	Serine/threonine-protein kinase Rio1

GOSlim

17 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
protein kinase activity	Blast	molecular function
protein serine/threonine kinase activity	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
protein phosphorylation	Orthology	biological process
kinase activity	Orthology	molecular function
phosphorylation	Orthology	biological process
transferase activity	Orthology	molecular function
hydrolase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
RNA processing	Orthology	biological process
macromolecular complex	Orthology	cellular component
enzyme binding	Blast	molecular function

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
protein serine/threonine kinase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
rRNA processing	Hs	biological process
protein phosphorylation	Hs	biological process
kinase activity	Hs	molecular function
phosphorylation	Hs	biological process
transferase activity	Hs	molecular function
hydrolase activity	Hs	molecular function
maturation of SSU-rRNA	Hs	biological process
preribosome, small subunit precursor	Hs	cellular component
ribosome biogenesis	Hs	biological process
ribosomal small subunit biogenesis	Hs	biological process
metal ion binding	Hs	molecular function

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	516	2.09e-179
protein kinase activity	Hs	molecular function	71.6	3.90e-13
protein serine/threonine kinase activity	Hs	molecular function	516	2.09e-179
protein binding	Hs	molecular function	516	2.09e-179
ATP binding	Hs	molecular function	516	2.09e-179
nucleoplasm	Hs	cellular component	516	2.09e-179
cytoplasm	Hs	cellular component	516	2.09e-179
cytosol	Hs	cellular component	516	2.09e-179
kinase activity	Hs	molecular function	516	2.09e-179
transferase activity	Hs	molecular function	516	2.09e-179
hydrolase activity	Hs	molecular function	516	2.09e-179
preribosome, small subunit precursor	Hs	cellular component	516	2.09e-179
metal ion binding	Hs	molecular function	516	2.09e-179
caspase binding	Hs	molecular function	256	6.77e-79

GO (InterProScan)