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Gene Card

Best human hits

TAF1A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006380

Gene Model ID

KH2012:KH.C4.300

Location

KhC4:3152676..3155518

Transcript Models and Sequences

  KH2012:KH.C4.300.v1.A.nonSL10-1
KH2012:KH.C4.300.v1.A.nonSL11-1
KH2012:KH.C4.300.v1.A.nonSL2-1
KH2012:KH.C4.300.v1.A.nonSL3-1
KH2012:KH.C4.300.v1.A.nonSL4-1
KH2012:KH.C4.300.v1.A.nonSL5-1
KH2012:KH.C4.300.v1.A.nonSL6-1
KH2012:KH.C4.300.v1.A.nonSL7-1
KH2012:KH.C4.300.v1.A.nonSL8-1
KH2012:KH.C4.300.v1.A.nonSL9-1
KH2012:KH.C4.300.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000003594
NCBI Reference Sequence XM_002119785.3
Collections

Gateway full ORF

2 results

cima896877

Plate: VES72_A03

cien190451

Plate: VES99_F18

Gene collection 1 (N. Satoh)

1 result

cicl003l24

Plate: R1CiGC08h05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

No result

IPR Term Analysis Definition

GOSlim

11 results

GO Term Annotation Origin Type
DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
microtubule cytoskeleton Orthology cellular component
nucleolus Orthology cellular component
macromolecular complex Orthology cellular component
positive regulation of gene expression Orthology biological process

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase I transcription factor complex Hs cellular component
DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase I promoter Hs biological process
termination of RNA polymerase I transcription Hs biological process
transcription from RNA polymerase II promoter Hs biological process
microtubule cytoskeleton Hs cellular component
positive regulation of gene expression, epigenetic Hs biological process

GO (Blast)

6 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase I transcription factor complex Hs cellular component 110 3.09e-26
DNA binding Hs molecular function 110 3.09e-26
protein binding Hs molecular function 110 3.09e-26
nucleus Hs cellular component 110 3.09e-26
nucleoplasm Hs cellular component 110 3.09e-26
microtubule cytoskeleton Hs cellular component 110 3.09e-26

GO (InterProScan)

No result

GO Term Analysis Type e-value

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