Aniseed - Gene card

Gene Card

Best human hits

AC092647.5; MRPS17

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006438

Gene Model ID

KH2012:KH.C4.354

Location

KhC4:3955256..3957304

Transcript Models and Sequences

KH2012:KH.C4.354.v1.A.SL1-1
KH2012:KH.C4.354.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000013502
NCBI Reference Sequence	XM_002128186.1
NCBI Reference Sequence	XM_002128248.3

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

1 result

cicl051l05

Plate: R1CiGC14c19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
Ribosomal_S17/S11	ProDom	Ribosomal protein S17/S11
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold

GOSlim

9 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
intracellular	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
ribosome	Orthology	cellular component
regulation of transcription, DNA-templated	Orthology	biological process
mitochondrial matrix	Orthology	cellular component

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
intracellular	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial small ribosomal subunit	Hs	cellular component
ribosome	Hs	cellular component
regulation of transcription, DNA-templated	Hs	biological process
translation	Hs	biological process
rRNA binding	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
mitochondrial translation	Hs	biological process
mitochondrial translational elongation	Hs	biological process
mitochondrial translational termination	Hs	biological process

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	65.5	1.36e-13
RNA binding	Hs	molecular function	66.2	1.30e-14
structural constituent of ribosome	Hs	molecular function	66.2	1.30e-14
intracellular	Hs	cellular component	66.2	1.30e-14
mitochondrion	Hs	cellular component	66.2	1.30e-14
mitochondrial inner membrane	Hs	cellular component	66.2	1.30e-14
mitochondrial small ribosomal subunit	Hs	cellular component	66.2	1.30e-14
ribosome	Hs	cellular component	66.2	1.30e-14
rRNA binding	Hs	molecular function	66.2	1.30e-14
intracellular ribonucleoprotein complex	Hs	cellular component	66.2	1.30e-14

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	ProDom	molecular function	6.0E-4
intracellular	ProDom	cellular component	6.0E-4
ribosome	ProDom	cellular component	6.0E-4
translation	ProDom	biological process	6.0E-4