Aniseed - Gene card

Gene Card

Best human hits

LSM7; LSM8; SNRPG

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006510

Gene Model ID

KH2012:KH.C4.420

Location

KhC4:1755563..1756366

Transcript Models and Sequences

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002130386.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl031m24

Plate: R1CiGC12m04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
LSM_dom_euk/arc	SMART	LSM domain, eukaryotic/archaea-type
Sm_G	CDD	Small nuclear ribonucleoprotein G
LSM_dom_euk/arc	Pfam	LSM domain, eukaryotic/archaea-type
LSM_dom_sf	SUPERFAMILY	LSM domain superfamily

GOSlim

15 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transcription from RNA polymerase II promoter	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
intracellular transport	Orthology	biological process

GO (Orthology)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
spliceosomal complex assembly	Hs	biological process
spliceosomal snRNP assembly	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U5 snRNP	Hs	cellular component
U7 snRNP	Hs	cellular component
U1 snRNP	Hs	cellular component
U2 snRNP	Hs	cellular component
U4 snRNP	Hs	cellular component
U12-type spliceosomal complex	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
termination of RNA polymerase II transcription	Hs	biological process
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
small nuclear ribonucleoprotein complex	Hs	cellular component
methylosome	Hs	cellular component
SMN-Sm protein complex	Hs	cellular component
P granule	Hs	cellular component
nuclear import	Hs	biological process
U2-type prespliceosome	Hs	cellular component
precatalytic spliceosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component
spliceosomal tri-snRNP complex	Hs	cellular component

GO (Blast)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	94.7	2.32e-27
protein binding	Hs	molecular function	94.7	2.32e-27
nucleus	Hs	cellular component	94.7	2.32e-27
nucleoplasm	Hs	cellular component	94.7	2.32e-27
spliceosomal complex	Hs	cellular component	94.7	2.32e-27
U5 snRNP	Hs	cellular component	94.7	2.32e-27
U7 snRNP	Hs	cellular component	94.7	2.32e-27
U1 snRNP	Hs	cellular component	94.7	2.32e-27
U2 snRNP	Hs	cellular component	94.7	2.32e-27
U4 snRNP	Hs	cellular component	94.7	2.32e-27
U6 snRNP	Hs	cellular component	56.6	2.68e-12
U12-type spliceosomal complex	Hs	cellular component	94.7	2.32e-27
cytoplasm	Hs	cellular component	94.7	2.32e-27
cytosol	Hs	cellular component	94.7	2.32e-27
U6 snRNA binding	Hs	molecular function	56.6	2.68e-12
intracellular ribonucleoprotein complex	Hs	cellular component	94.7	2.32e-27
small nuclear ribonucleoprotein complex	Hs	cellular component	94.7	2.32e-27
methylosome	Hs	cellular component	94.7	2.32e-27
SMN-Sm protein complex	Hs	cellular component	94.7	2.32e-27
P granule	Hs	cellular component	94.7	2.32e-27
U4/U6 x U5 tri-snRNP complex	Hs	cellular component	38.5	2.61e-05
U2-type prespliceosome	Hs	cellular component	94.7	2.32e-27
precatalytic spliceosome	Hs	cellular component	94.7	2.32e-27
catalytic step 2 spliceosome	Hs	cellular component	94.7	2.32e-27
spliceosomal tri-snRNP complex	Hs	cellular component	94.7	2.32e-27
Lsm1-7-Pat1 complex	Hs	cellular component	56.6	2.68e-12

GO (InterProScan)