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Gene Card

Best human hits

COPS7A; EIF3M; VCL

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006574

Gene Model ID

KH2012:KH.C4.479

Location

KhC4:2952360..2956335

Transcript Models and Sequences

  KH2012:KH.C4.479.v1.A.nonSL10-1
KH2012:KH.C4.479.v1.A.nonSL11-1
KH2012:KH.C4.479.v1.A.nonSL2-1
KH2012:KH.C4.479.v1.A.nonSL3-1
KH2012:KH.C4.479.v1.A.nonSL4-1
KH2012:KH.C4.479.v1.A.nonSL5-1
KH2012:KH.C4.479.v1.A.nonSL6-1
KH2012:KH.C4.479.v1.A.nonSL7-1
KH2012:KH.C4.479.v1.A.nonSL8-1
KH2012:KH.C4.479.v1.A.nonSL9-1
KH2012:KH.C4.479.v1.A.SL1-1
KH2012:KH.C4.479.v1.A.SL12-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000003291
Collections

Gateway full ORF

2 results

cien75705

Plate: VES82_O06

cima896788

Plate: VES72_K02

Gene collection 1 (N. Satoh)

2 results

cilv035n05

Plate: R1CiGC27p12

cicl024c06

Plate: R1CiGC11m22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
eIF3m Hamap Eukaryotic translation initiation factor 3 subunit M
PCI_dom Pfam Proteasome component (PCI) domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
PCI_dom SMART Proteasome component (PCI) domain

GOSlim

39 results

GO Term Annotation Origin Type
actin binding Blast molecular function
structural molecule activity Blast molecular function
binding Orthology molecular function
protein binding Orthology molecular function
extracellular region Blast cellular component
cell Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
brush border Blast cellular component
adherens junction Blast cellular component
focal adhesion Blast cellular component
translational initiation Orthology biological process
membrane Blast cellular component
cell junction Blast cellular component
cell-substrate junction Blast cellular component
ubiquitin protein ligase binding Blast molecular function
macromolecular complex Orthology cellular component
actin filament binding Blast molecular function
extracellular exosome Blast cellular component
extracellular vesicle Blast cellular component
RNA binding Orthology molecular function
regulation of gene expression Orthology biological process
cytoplasmic part Orthology cellular component
cytoskeletal part Blast cellular component
nuclear part Blast cellular component
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component
organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
cell adhesion molecule binding Blast molecular function
anchoring junction Blast cellular component
cell part Blast cellular component
cell periphery Blast cellular component

GO (Orthology)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
cytoplasmic translational initiation Hs biological process
translation initiation factor activity Hs molecular function
binding Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
eukaryotic translation initiation factor 3 complex Hs cellular component
translation Hs biological process
translational initiation Hs biological process
translation initiation factor binding Hs molecular function
eukaryotic translation initiation factor 3 complex, eIF3m Hs cellular component

GO (Blast)

46 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
podosome Hs cellular component 38.9 0.005
dystroglycan binding Hs molecular function 38.9 0.005
translation initiation factor activity Hs molecular function 345 1.95e-117
actin binding Hs molecular function 38.9 0.005
structural molecule activity Hs molecular function 38.9 0.005
binding Hs molecular function 345 1.95e-117
protein binding Hs molecular function 345 1.95e-117
extracellular region Hs cellular component 38.9 0.005
cell Hs cellular component 38.9 0.005
nucleus Hs cellular component 40.0 0.001
nucleoplasm Hs cellular component 40.0 0.001
cytoplasm Hs cellular component 345 1.95e-117
cytosol Hs cellular component 345 1.95e-117
eukaryotic translation initiation factor 3 complex Hs cellular component 345 1.95e-117
cytoskeleton Hs cellular component 38.9 0.005
plasma membrane Hs cellular component 38.9 0.005
brush border Hs cellular component 38.9 0.005
cell-cell junction Hs cellular component 38.9 0.005
adherens junction Hs cellular component 38.9 0.005
cell-cell adherens junction Hs cellular component 38.9 0.005
zonula adherens Hs cellular component 38.9 0.005
fascia adherens Hs cellular component 38.9 0.005
focal adhesion Hs cellular component 38.9 0.005
beta-catenin binding Hs molecular function 38.9 0.005
COP9 signalosome Hs cellular component 40.0 0.001
actin cytoskeleton Hs cellular component 38.9 0.005
membrane Hs cellular component 38.9 0.005
cell junction Hs cellular component 38.9 0.005
cell-substrate junction Hs cellular component 38.9 0.005
translation initiation factor binding Hs molecular function 345 1.95e-117
ubiquitin protein ligase binding Hs molecular function 38.9 0.005
macromolecular complex Hs cellular component 38.9 0.005
secretory granule lumen Hs cellular component 38.9 0.005
specific granule lumen Hs cellular component 38.9 0.005
sarcolemma Hs cellular component 38.9 0.005
costamere Hs cellular component 38.9 0.005
alpha-catenin binding Hs molecular function 38.9 0.005
cadherin binding Hs molecular function 38.9 0.005
actin filament binding Hs molecular function 38.9 0.005
extracellular exosome Hs cellular component 38.9 0.005
eukaryotic translation initiation factor 3 complex, eIF3m Hs cellular component 345 1.95e-117
outer dense plaque of desmosome Hs cellular component 38.9 0.005
inner dense plaque of desmosome Hs cellular component 38.9 0.005
extracellular vesicle Hs cellular component 38.9 0.005
ficolin-1-rich granule lumen Hs cellular component 38.9 0.005
terminal web Hs cellular component 38.9 0.005

GO (InterProScan)

4 results

GO Term Analysis Type e-value
translation initiation factor activity Hamap molecular function 21.868
protein binding Pfam molecular function 3.5E-16
cytoplasm Hamap cellular component 21.868
eukaryotic translation initiation factor 3 complex Hamap cellular component 21.868

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