Aniseed - Gene card

Gene Card

Best human hits

COL12A1; MATN2; MATN4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006608

Gene Model ID

KH2012:KH.C4.510

Location

KhC4:4979893..4986571

Transcript Models and Sequences

KH2012:KH.C4.510.v1.A.ND1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000013451

Collections

Gene collection 1 (N. Satoh)

1 result

citb032j08

Plate: R1CiGC31h12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

17 results

IPR Term	Analysis	Definition
Sushi_SCR_CCP_dom	CDD	Sushi/SCR/CCP domain
VWF_A	Pfam	von Willebrand factor, type A
EGF_Ca-bd_CS	ProSitePatterns	EGF-like calcium-binding, conserved site
Sushi_SCR_CCP_dom	ProSiteProfiles	Sushi/SCR/CCP domain
EGF-like_dom	SMART	EGF-like domain
VWF_A	ProSiteProfiles	von Willebrand factor, type A
vWFA_dom_sf	Gene3D	von Willebrand factor A-like domain superfamily
EGF-like_dom	Pfam	EGF-like domain
EGF-like_CS	ProSitePatterns	EGF-like, conserved site
Sushi/SCR/CCP_sf	SUPERFAMILY	Sushi/SCR/CCP superfamily
EGF-like_dom	ProSiteProfiles	EGF-like domain
EGF-type_Asp/Asn_hydroxyl_site	ProSitePatterns	EGF-type aspartate/asparagine hydroxylation site
vWFA_dom_sf	SUPERFAMILY	von Willebrand factor A-like domain superfamily
VWF_A	SMART	von Willebrand factor, type A
Sushi_SCR_CCP_dom	SMART	Sushi/SCR/CCP domain
EGF-like_Ca-bd_dom	SMART	EGF-like calcium-binding domain
Sushi_SCR_CCP_dom	Pfam	Sushi/SCR/CCP domain

GOSlim

10 results

GO Term	Annotation Origin	Type
calcium ion binding	Blast	molecular function
protein binding	Blast	molecular function
extracellular region	Blast	cellular component
extracellular space	Blast	cellular component
endoplasmic reticulum lumen	Blast	cellular component
extracellular exosome	Blast	cellular component
extracellular vesicle	Blast	cellular component
macromolecular complex	Blast	cellular component
extracellular region part	Blast	cellular component
structural molecule activity	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
calcium ion binding	Hs	molecular function	117	1.42e-27
protein binding	Hs	molecular function	117	1.42e-27
extracellular region	Hs	cellular component	117	1.42e-27
proteinaceous extracellular matrix	Hs	cellular component	117	1.42e-27
collagen trimer	Hs	cellular component	95.1	2.81e-20
collagen type XII trimer	Hs	cellular component	95.1	2.81e-20
basement membrane	Hs	cellular component	117	1.42e-27
extracellular space	Hs	cellular component	117	1.42e-27
endoplasmic reticulum lumen	Hs	cellular component	95.1	2.81e-20
extracellular matrix structural constituent conferring tensile strength	Hs	molecular function	95.1	2.81e-20
extracellular matrix	Hs	cellular component	117	1.42e-27
extracellular exosome	Hs	cellular component	95.1	2.81e-20
extracellular vesicle	Hs	cellular component	95.1	2.81e-20

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
calcium ion binding	SMART	molecular function	2.8E-6