Aniseed - Gene card

Gene Card

Best human hits

TNNT1; TNNT2; TNNT3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006671

Gene Model ID

KH2012:KH.C4.57

Location

KhC4:5218632..5221861

Transcript Models and Sequences

KH2012:KH.C4.57.v1.A.SL1-1
KH2012:KH.C4.57.v2.R.ND2-1
KH2012:KH.C4.57.v3.A.SL1-1
KH2012:KH.C4.57.v4.A.SL1-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000024998
NCBI Reference Sequence	XM_002131125.4
NCBI Reference Sequence	XM_002131148.3
NCBI Reference Sequence	XM_004225947.3

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

3 results

citb087c17

Plate: R1CiGC46l03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

14 results

Ci-troponinT -2191/74 REG00000515 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
TNNT	PANTHER	Troponin T
Troponin	Pfam	Troponin
Troponin_sf	Gene3D	Troponin domain superfamily

GOSlim

15 results

GO Term	Annotation Origin	Type
actin binding	Orthology	molecular function
protein binding	Orthology	molecular function
cytosol	Orthology	cellular component
cytoskeletal protein binding	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
cytoskeletal part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
organelle part	Orthology	cellular component
nucleoside-triphosphatase activity	Orthology	molecular function
positive regulation of hydrolase activity	Orthology	biological process
protein oligomerization	Orthology	biological process
organelle organization	Orthology	biological process
heart development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process

GO (Orthology)

30 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
skeletal muscle contraction	Hs	biological process
actin binding	Hs	molecular function
protein binding	Hs	molecular function
tropomyosin binding	Hs	molecular function
cytosol	Hs	cellular component
troponin complex	Hs	cellular component
striated muscle thin filament	Hs	cellular component
muscle contraction	Hs	biological process
regulation of muscle contraction	Hs	biological process
regulation of striated muscle contraction	Hs	biological process
regulation of heart contraction	Hs	biological process
myofibril	Hs	cellular component
sarcomere	Hs	cellular component
troponin C binding	Hs	molecular function
protein binding, bridging	Hs	molecular function
calcium-dependent ATPase activity	Hs	molecular function
troponin I binding	Hs	molecular function
troponin T binding	Hs	molecular function
negative regulation of ATPase activity	Hs	biological process
positive regulation of ATPase activity	Hs	biological process
regulation of ATPase activity	Hs	biological process
negative regulation of muscle contraction	Hs	biological process
calcium-dependent protein binding	Hs	molecular function
protein heterooligomerization	Hs	biological process
response to calcium ion	Hs	biological process
actin crosslink formation	Hs	biological process
ventricular cardiac muscle tissue morphogenesis	Hs	biological process
cardiac muscle contraction	Hs	biological process
cardiac myofibril	Hs	cellular component
cardiac Troponin complex	Hs	cellular component

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
actin binding	Hs	molecular function	201	2.74e-63
protein binding	Hs	molecular function	201	2.74e-63
tropomyosin binding	Hs	molecular function	201	2.74e-63
cytosol	Hs	cellular component	201	2.74e-63
troponin complex	Hs	cellular component	201	2.74e-63
striated muscle thin filament	Hs	cellular component	201	2.74e-63
myofibril	Hs	cellular component	201	2.74e-63
sarcomere	Hs	cellular component	201	2.74e-63
troponin C binding	Hs	molecular function	201	2.74e-63
protein binding, bridging	Hs	molecular function	201	2.74e-63
calcium-dependent ATPase activity	Hs	molecular function	194	5.93e-61
troponin I binding	Hs	molecular function	201	2.74e-63
troponin T binding	Hs	molecular function	172	4.86e-52
calcium-dependent protein binding	Hs	molecular function	194	5.93e-61
cardiac myofibril	Hs	cellular component	201	2.74e-63
cardiac Troponin complex	Hs	cellular component	201	2.74e-63

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
troponin complex	PANTHER	cellular component	9.8E-89
regulation of muscle contraction	PANTHER	biological process	9.8E-89