Aniseed - Gene card

Gene Card

Best human hits

TMED3; TMED7; TMED7-TICAM2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006686

Gene Model ID

KH2012:KH.C4.584

Location

KhC4:2667589..2670841

Transcript Models and Sequences

KH2012:KH.C4.584.v1.A.nonSL10-1
KH2012:KH.C4.584.v1.A.nonSL1-1
KH2012:KH.C4.584.v1.A.nonSL11-1
KH2012:KH.C4.584.v1.A.nonSL12-1
KH2012:KH.C4.584.v1.A.nonSL13-1
KH2012:KH.C4.584.v1.A.nonSL2-1
KH2012:KH.C4.584.v1.A.nonSL3-1
KH2012:KH.C4.584.v1.A.nonSL4-1
KH2012:KH.C4.584.v1.A.nonSL5-1
KH2012:KH.C4.584.v1.A.nonSL7-1
KH2012:KH.C4.584.v1.A.nonSL9-1
KH2012:KH.C4.584.v1.A.SL1-1
KH2012:KH.C4.584.v1.A.SL6-1
KH2012:KH.C4.584.v1.A.SL8-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000001915
NCBI Reference Sequence	XM_002126351.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl056p06

Plate: R1CiGC14d16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
TMP21-related	PANTHER	TMP21-related
GOLD_dom	SMART	GOLD domain
TMED7	PANTHER	Transmembrane emp24 domain-containing protein 7
GOLD_dom_sf	SUPERFAMILY	GOLD domain superfamily
GOLD_dom	ProSiteProfiles	GOLD domain
GOLD_dom	Pfam	GOLD domain

GOSlim

22 results

GO Term	Annotation Origin	Type
Golgi membrane	Orthology	cellular component
protein binding	Orthology	molecular function
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
signal transduction	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
extracellular exosome	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
intracellular transport	Orthology	biological process
cytoplasm	Orthology	cellular component
whole membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
endomembrane system	Orthology	cellular component
membrane part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
Golgi apparatus part	Orthology	cellular component

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
Golgi membrane	Hs	cellular component
protein binding	Hs	molecular function
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component
Golgi apparatus	Hs	cellular component
ER to Golgi vesicle-mediated transport	Hs	biological process
retrograde vesicle-mediated transport, Golgi to ER	Hs	biological process
signal transduction	Hs	biological process
ER to Golgi transport vesicle membrane	Hs	cellular component
protein transport	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
COPI vesicle coat	Hs	cellular component
COPII vesicle coat	Hs	cellular component
transport vesicle	Hs	cellular component
COPI-coated vesicle membrane	Hs	cellular component
cytoplasmic vesicle	Hs	cellular component
Golgi cisterna membrane	Hs	cellular component
endoplasmic reticulum-Golgi intermediate compartment membrane	Hs	cellular component
extracellular exosome	Hs	cellular component

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	230	6.67e-77
protein binding	Hs	molecular function	207	7.42e-66
endoplasmic reticulum	Hs	cellular component	230	6.67e-77
endoplasmic reticulum membrane	Hs	cellular component	230	6.67e-77
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component	230	6.67e-77
Golgi apparatus	Hs	cellular component	230	6.67e-77
ER to Golgi transport vesicle membrane	Hs	cellular component	230	6.67e-77
membrane	Hs	cellular component	230	6.67e-77
integral component of membrane	Hs	cellular component	230	6.67e-77
COPI vesicle coat	Hs	cellular component	230	6.67e-77
COPII vesicle coat	Hs	cellular component	230	6.67e-77
transport vesicle	Hs	cellular component	230	6.67e-77
COPI-coated vesicle membrane	Hs	cellular component	230	6.67e-77
cytoplasmic vesicle	Hs	cellular component	230	6.67e-77
Golgi cisterna membrane	Hs	cellular component	218	2.38e-72
endoplasmic reticulum-Golgi intermediate compartment membrane	Hs	cellular component	230	6.67e-77
extracellular exosome	Hs	cellular component	230	6.67e-77

GO (InterProScan)