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Gene Card

Best human hits

EPAS1; HIF1A; HIF3A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006939

Gene Model ID

KH2012:KH.C4.83

Location

KhC4:2861366..2876805

Transcript Models and Sequences

  KH2012:KH.C4.83.v1.A.nonSL5-1
KH2012:KH.C4.83.v1.A.SL1-1
KH2012:KH.C4.83.v2.A.nonSL4-1
KH2012:KH.C4.83.v2.A.SL2-1
KH2012:KH.C4.83.v2.A.SL3-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000002100
ENSEMBL ENSCING00000021869
NCBI Reference Sequence NM_001078263.1
Collections

Gateway full ORF

2 results

cien70822

Plate: VES81_H11

cima878685

Plate: VES68_H09

Gene collection 1 (N. Satoh)

2 results

ciad014n02

Plate: R1CiGC02f23

cieg045m19

Plate: R1CiGC22n02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
PAS ProSiteProfiles PAS domain
PAS CDD PAS domain
PAC SMART PAC motif
HIF-1_TAD_C Pfam HIF-1 alpha, transactivation domain, C-terminal
PAS Pfam PAS domain
PAS-like_dom_sf SUPERFAMILY PAS domain superfamily
PAS SMART PAS domain
PAS TIGRFAM PAS domain
PAS_fold_3 Pfam PAS fold-3
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily
bHLH_dom ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom CDD Myc-type, basic helix-loop-helix (bHLH) domain

GOSlim

32 results

GO Term Annotation Origin Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription factor activity, transcription factor binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
mitochondrion Blast cellular component
cytosol Blast cellular component
plasma membrane Blast cellular component
transcription factor binding Blast molecular function
nuclear body Blast cellular component
nuclear speck Blast cellular component
enzyme binding Blast molecular function
protein kinase binding Blast molecular function
ubiquitin protein ligase binding Blast molecular function
macromolecular complex Blast cellular component
sequence-specific DNA binding Blast molecular function
protein heterodimerization activity Blast molecular function
protein dimerization activity Blast molecular function
intracellular part Blast cellular component
organelle Blast cellular component
cell projection Blast cellular component
plasma membrane region Blast cellular component
receptor binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
nuclear part Blast cellular component
cytoplasmic part Blast cellular component
cell projection part Blast cellular component
axon Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 302 8.38e-91
transcription factor activity, transcription factor binding Hs molecular function 302 8.38e-91
transcription factor activity, RNA polymerase II transcription factor binding Hs molecular function 302 8.38e-91
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 302 8.38e-91
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 302 8.38e-91
p53 binding Hs molecular function 302 8.38e-91
DNA binding Hs molecular function 302 8.38e-91
transcription factor activity, sequence-specific DNA binding Hs molecular function 302 8.38e-91
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 302 8.38e-91
protein binding Hs molecular function 302 8.38e-91
nucleus Hs cellular component 302 8.38e-91
nucleoplasm Hs cellular component 302 8.38e-91
transcription factor complex Hs cellular component 302 8.38e-91
cytoplasm Hs cellular component 302 8.38e-91
mitochondrion Hs cellular component 253 2.65e-74
cytosol Hs cellular component 302 8.38e-91
plasma membrane Hs cellular component 253 2.65e-74
transcription factor binding Hs molecular function 302 8.38e-91
nuclear body Hs cellular component 302 8.38e-91
nuclear speck Hs cellular component 302 8.38e-91
enzyme binding Hs molecular function 302 8.38e-91
protein kinase binding Hs molecular function 302 8.38e-91
protein domain specific binding Hs molecular function 302 8.38e-91
motile cilium Hs cellular component 302 8.38e-91
ubiquitin protein ligase binding Hs molecular function 302 8.38e-91
macromolecular complex Hs cellular component 302 8.38e-91
histone acetyltransferase binding Hs molecular function 302 8.38e-91
nuclear hormone receptor binding Hs molecular function 302 8.38e-91
histone deacetylase binding Hs molecular function 302 8.38e-91
sequence-specific DNA binding Hs molecular function 302 8.38e-91
protein heterodimerization activity Hs molecular function 302 8.38e-91
protein dimerization activity Hs molecular function 302 8.38e-91
Hsp90 protein binding Hs molecular function 302 8.38e-91
E-box binding Hs molecular function 302 8.38e-91
RNA polymerase II transcription factor complex Hs cellular component 302 8.38e-91
axon cytoplasm Hs cellular component 302 8.38e-91

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 3.4E-18
protein dimerization activity SUPERFAMILY molecular function 7.27E-6

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