Aniseed - Gene card

GENE CARD

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Gene Card

Best human hits

B3GALNT2; B3GALT6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006946

Gene Model ID

KH2012:KH.C4.9

Location

KhC4:3744864..3748576

Transcript Models and Sequences

KH2012:KH.C4.9.v1.A.ND2-2
KH2012:KH.C4.9.v1.A.nonSL10-2
KH2012:KH.C4.9.v1.A.nonSL11-2
KH2012:KH.C4.9.v1.A.nonSL3-2
KH2012:KH.C4.9.v1.A.nonSL4-2
KH2012:KH.C4.9.v1.A.nonSL5-2
KH2012:KH.C4.9.v1.A.nonSL6-2
KH2012:KH.C4.9.v1.A.nonSL7-2
KH2012:KH.C4.9.v1.A.nonSL8-2
KH2012:KH.C4.9.v1.A.nonSL9-2
KH2012:KH.C4.9.v2.A.nonSL10-1
KH2012:KH.C4.9.v2.A.nonSL3-1
KH2012:KH.C4.9.v2.A.nonSL4-1
KH2012:KH.C4.9.v2.A.nonSL5-1
KH2012:KH.C4.9.v2.A.nonSL6-1
KH2012:KH.C4.9.v2.A.nonSL7-1
KH2012:KH.C4.9.v2.A.nonSL8-1
KH2012:KH.C4.9.v2.A.nonSL9-1
KH2012:KH.C4.9.v2.R.ND1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_002126137.4

Collections

Gateway full ORF

3 results

cien69313

Plate: VES81_P02

cien207567

Plate: VES102_G13

cien214398

Plate: VES103_P14

Gene collection 1 (N. Satoh)

2 results

cieg002f10

Plate: R1CiGC15p05

cieg031b24

Plate: R1CiGC20j07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Glyco_trans_31	PANTHER	Glycosyl transferase, family 31
Glyco_trans_31	Pfam	Glycosyl transferase, family 31
Arv1	PANTHER	Arv1 protein
Arv1	Pfam	Arv1 protein

GOSlim

9 results

GO Term	Annotation Origin	Type
Golgi membrane	Blast	cellular component
endoplasmic reticulum	Blast	cellular component
endoplasmic reticulum membrane	Blast	cellular component
Golgi apparatus	Blast	cellular component
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
transferase activity	Blast	molecular function
Golgi apparatus part	Blast	cellular component
cellular protein modification process	InterProScan	biological process

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	240	8.63e-73
endoplasmic reticulum	Hs	cellular component	240	8.63e-73
endoplasmic reticulum membrane	Hs	cellular component	240	8.63e-73
Golgi apparatus	Hs	cellular component	240	8.63e-73
Golgi medial cisterna	Hs	cellular component	89.4	2.21e-19
acetylglucosaminyltransferase activity	Hs	molecular function	240	8.63e-73
acetylgalactosaminyltransferase activity	Hs	molecular function	240	8.63e-73
galactosyltransferase activity	Hs	molecular function	240	8.63e-73
UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity	Hs	molecular function	89.4	2.21e-19
membrane	Hs	cellular component	240	8.63e-73
integral component of membrane	Hs	cellular component	240	8.63e-73
transferase activity	Hs	molecular function	240	8.63e-73
transferase activity, transferring glycosyl groups	Hs	molecular function	240	8.63e-73
Golgi cisterna membrane	Hs	cellular component	89.4	2.21e-19
UDP-galactosyltransferase activity	Hs	molecular function	89.4	2.21e-19
galactosylxylosylprotein 3-beta-galactosyltransferase activity	Hs	molecular function	89.4	2.21e-19

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
protein glycosylation	PANTHER	biological process	5.3E-97
galactosyltransferase activity	PANTHER	molecular function	5.3E-97
membrane	PANTHER	cellular component	5.3E-97

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