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Gene Card

Best human hits

EEF2; EFL1; EFTUD2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006966

Gene Model ID

KH2012:KH.C5.108

Location

KhC5:2335310..2341344

Transcript Models and Sequences

  KH2012:KH.C5.108.v1.B.nonSL10-1
KH2012:KH.C5.108.v1.B.nonSL11-1
KH2012:KH.C5.108.v1.B.nonSL12-1
KH2012:KH.C5.108.v1.B.nonSL13-1
KH2012:KH.C5.108.v1.B.nonSL14-1
KH2012:KH.C5.108.v1.B.nonSL15-1
KH2012:KH.C5.108.v1.B.nonSL16-1
KH2012:KH.C5.108.v1.B.nonSL2-1
KH2012:KH.C5.108.v1.B.nonSL3-1
KH2012:KH.C5.108.v1.B.nonSL4-1
KH2012:KH.C5.108.v1.B.nonSL5-1
KH2012:KH.C5.108.v1.B.nonSL6-1
KH2012:KH.C5.108.v1.B.nonSL7-1
KH2012:KH.C5.108.v1.B.nonSL8-1
KH2012:KH.C5.108.v1.B.nonSL9-1
KH2012:KH.C5.108.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000009356
NCBI Reference Sequence XM_009860333.2
Collections

Gateway full ORF

1 result

cima881618

Plate: VES68_N22

Gene collection 1 (N. Satoh)

2 results

cieg019g08

Plate: R1CiGC18o24

cigd021b08

Plate: R1CiGC41i06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
TF_GTP-bd_dom PRINTS Transcription factor, GTP-binding domain
G_TR_CS ProSitePatterns Tr-type G domain, conserved site
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Transl_elong_EFG/EF2_IV Pfam Translation elongation factor EFG/EF2, domain IV
EFG_III/V SUPERFAMILY EF-G domain III/V-like
Ribosomal_S5_D2-typ_fold SUPERFAMILY Ribosomal protein S5 domain 2-type fold
EFG_V-like SMART Elongation factor EFG, domain V-like
EFG_V-like Pfam Elongation factor EFG, domain V-like
TF_GTP-bd_dom Pfam Transcription factor, GTP-binding domain
Transl_B-barrel_sf SUPERFAMILY Translation protein, beta-barrel domain superfamily
Small_GTP-bd_dom TIGRFAM Small GTP-binding protein domain
Ribosomal_S5_D2-typ_fold_subgr Gene3D Ribosomal protein S5 domain 2-type fold, subgroup
Transl_elong_EFG/EF2_IV SMART Translation elongation factor EFG/EF2, domain IV
TF_GTP-bd_dom ProSiteProfiles Transcription factor, GTP-binding domain

GOSlim

42 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
RNA binding Orthology molecular function
GTPase activity Orthology molecular function
protein binding Orthology molecular function
GTP binding Orthology molecular function
extracellular region Orthology cellular component
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
membrane Orthology cellular component
nuclear speck Blast cellular component
protein kinase binding Orthology molecular function
membrane raft Orthology cellular component
actin filament binding Orthology molecular function
extracellular exosome Orthology cellular component
animal organ development Orthology biological process
immune system process Orthology biological process
cell differentiation Orthology biological process
response to stress Orthology biological process
regulation of gene expression Orthology biological process
macromolecular complex Orthology cellular component
cellular protein modification process Orthology biological process
developmental process Orthology biological process
neurogenesis Orthology biological process
cell proliferation Orthology biological process
intracellular part Orthology cellular component
response to lipid Orthology biological process
intracellular organelle part Orthology cellular component
cytoplasmic vesicle Orthology cellular component
endomembrane system Orthology cellular component
intracellular organelle lumen Orthology cellular component
cellular response to stress Orthology biological process
response to oxidative stress Orthology biological process
ribosome Orthology cellular component
macromolecular complex binding Orthology molecular function
cell adhesion molecule binding Orthology molecular function
response to organic substance Orthology biological process
positive regulation of gene expression Orthology biological process
nuclear part Blast cellular component
nuclear body Blast cellular component

GO (Orthology)

43 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
p53 binding Hs molecular function
hematopoietic progenitor cell differentiation Hs biological process
response to ischemia Hs biological process
skeletal muscle contraction Hs biological process
RNA binding Hs molecular function
translation elongation factor activity Hs molecular function
GTPase activity Hs molecular function
protein binding Hs molecular function
GTP binding Hs molecular function
extracellular region Hs cellular component
nucleus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
polysome Hs cellular component
plasma membrane Hs cellular component
translation Hs biological process
translational elongation Hs biological process
protein methylation Hs biological process
aging Hs biological process
5S rRNA binding Hs molecular function
glial cell proliferation Hs biological process
membrane Hs cellular component
aggresome Hs cellular component
peptidyl-diphthamide biosynthetic process from peptidyl-histidine Hs biological process
protein kinase binding Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
response to estradiol Hs biological process
secretory granule lumen Hs cellular component
response to endoplasmic reticulum stress Hs biological process
skeletal muscle cell differentiation Hs biological process
response to drug Hs biological process
response to hydrogen peroxide Hs biological process
polysomal ribosome Hs cellular component
ribosome binding Hs molecular function
membrane raft Hs cellular component
cadherin binding Hs molecular function
response to ethanol Hs biological process
positive regulation of translation Hs biological process
actin filament binding Hs molecular function
extracellular exosome Hs cellular component
ficolin-1-rich granule lumen Hs cellular component
positive regulation of cytoplasmic translation Hs biological process

GO (Blast)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 1237 0.0
p53 binding Hs molecular function 1237 0.0
RNA binding Hs molecular function 1237 0.0
translation elongation factor activity Hs molecular function 1237 0.0
GTPase activity Hs molecular function 1237 0.0
protein binding Hs molecular function 1237 0.0
GTP binding Hs molecular function 1237 0.0
extracellular region Hs cellular component 1237 0.0
nucleus Hs cellular component 1237 0.0
nucleoplasm Hs cellular component 579 0.0
spliceosomal complex Hs cellular component 579 0.0
cytoplasm Hs cellular component 1237 0.0
cytosol Hs cellular component 1237 0.0
polysome Hs cellular component 1237 0.0
plasma membrane Hs cellular component 1237 0.0
5S rRNA binding Hs molecular function 1237 0.0
Cajal body Hs cellular component 579 0.0
membrane Hs cellular component 1237 0.0
aggresome Hs cellular component 1237 0.0
nuclear speck Hs cellular component 579 0.0
protein kinase binding Hs molecular function 1237 0.0
intracellular ribonucleoprotein complex Hs cellular component 1237 0.0
secretory granule lumen Hs cellular component 1237 0.0
polysomal ribosome Hs cellular component 1237 0.0
ribosome binding Hs molecular function 1237 0.0
membrane raft Hs cellular component 1237 0.0
cadherin binding Hs molecular function 1237 0.0
U4/U6 x U5 tri-snRNP complex Hs cellular component 579 0.0
actin filament binding Hs molecular function 1237 0.0
extracellular exosome Hs cellular component 1237 0.0
U2-type catalytic step 2 spliceosome Hs cellular component 579 0.0
catalytic step 2 spliceosome Hs cellular component 579 0.0
ficolin-1-rich granule lumen Hs cellular component 1237 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
GTPase activity Pfam molecular function 1.2E-64
GTP binding Pfam molecular function 1.2E-64

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