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Gene Card

Best human hits

KLF1; KLF2; KLF4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007016

Gene Model ID

KH2012:KH.C5.154

Location

KhC5:3913839..3916108

Transcript Models and Sequences

  KH2012:KH.C5.154.v1.A.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000012142
NCBI Reference Sequence NM_001078398.1
Collections

Gateway full ORF

1 result

cima836119

Plate: VES62_P23

Gene collection 1 (N. Satoh)

1 result

citb012d14

Plate: R1CiGC30i22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type SMART Zinc finger C2H2-type

GOSlim

46 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
core promoter proximal region sequence-specific DNA binding Blast molecular function
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
double-stranded DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription factor binding Orthology molecular function
zinc ion binding Blast molecular function
cell differentiation Orthology biological process
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Blast molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
angiogenesis Orthology biological process
Golgi apparatus Orthology cellular component
positive regulation of cell proliferation Orthology biological process
intracellular membrane-bounded organelle Orthology cellular component
cellular response to organic substance Orthology biological process
cell projection assembly Orthology biological process
animal organ development Orthology biological process
cell development Orthology biological process
system development Orthology biological process
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
intracellular part Blast cellular component
macromolecular complex Blast cellular component
kinase binding Blast molecular function
organic substance metabolic process Blast biological process
kinase activity Blast molecular function
regulation of cellular metabolic process Blast biological process
enzyme regulator activity Blast molecular function
enzyme binding Blast molecular function
nuclear part Blast cellular component
chromatin binding Blast molecular function

GO (Orthology)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription factor binding Hs molecular function
sequence-specific DNA binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
cellular response to organic cyclic compound Hs biological process
angiogenesis Hs biological process
Golgi apparatus Hs cellular component
positive regulation of cell proliferation Hs biological process
microvillus assembly Hs biological process
regulation of microvillus assembly Hs biological process
skeletal muscle cell differentiation Hs biological process
intracellular membrane-bounded organelle Hs cellular component
positive regulation of fat cell differentiation Hs biological process
intestinal epithelial cell development Hs biological process

GO (Blast)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromatin Hs cellular component 192 8.69e-56
nuclear chromatin Hs cellular component 192 8.69e-56
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 192 8.69e-56
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 192 8.69e-56
core promoter proximal region sequence-specific DNA binding Hs molecular function 192 8.69e-56
transcription factor activity, sequence-specific DNA binding transcription factor recruiting Hs molecular function 192 8.69e-56
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 192 8.69e-56
RNA polymerase II transcription factor binding Hs molecular function 192 8.69e-56
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function 192 8.69e-56
transcription cofactor binding Hs molecular function 192 8.69e-56
nucleic acid binding Hs molecular function 192 8.69e-56
DNA binding Hs molecular function 192 8.69e-56
double-stranded DNA binding Hs molecular function 192 8.69e-56
transcription factor activity, sequence-specific DNA binding Hs molecular function 192 8.69e-56
protein binding Hs molecular function 192 8.69e-56
nucleus Hs cellular component 192 8.69e-56
nucleoplasm Hs cellular component 192 8.69e-56
transcription factor complex Hs cellular component 192 8.69e-56
nuclear euchromatin Hs cellular component 192 8.69e-56
cytoplasm Hs cellular component 192 8.69e-56
beta-catenin binding Hs molecular function 192 8.69e-56
transcription factor binding Hs molecular function 192 8.69e-56
zinc ion binding Hs molecular function 192 8.69e-56
phosphatidylinositol 3-kinase regulator activity Hs molecular function 192 8.69e-56
histone deacetylase binding Hs molecular function 192 8.69e-56
sequence-specific DNA binding Hs molecular function 192 8.69e-56
transcription regulatory region DNA binding Hs molecular function 192 8.69e-56
nuclear transcription factor complex Hs cellular component 192 8.69e-56
metal ion binding Hs molecular function 192 8.69e-56
promoter-specific chromatin binding Hs molecular function 192 8.69e-56

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 4.2E-5

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