Aniseed - Gene card

Gene Card

Best human hits

RPS2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007048

Gene Model ID

KH2012:KH.C5.184

Location

KhC5:2221122..2224750

Transcript Models and Sequences

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000019985
NCBI Reference Sequence	XM_004226005.3
NCBI Reference Sequence	XM_009860329.1
NCBI Reference Sequence	XM_018811945.1

Collections

Gene collection 1 (N. Satoh)

2 results

cicl027l24

Plate: R1CiGC11j10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Ribosomal_S5_N	Pfam	Ribosomal protein S5, N-terminal
Ribosomal_S5	PANTHER	Ribosomal protein S5
Ribosomal_S5_C	Pfam	Ribosomal protein S5, C-terminal
Ribosomal_S5_D2-typ_fold	SUPERFAMILY	Ribosomal protein S5 domain 2-type fold
Ribosomal_S5_N_CS	ProSitePatterns	Ribosomal protein S5, N-terminal, conserved site
Ribosomal_S5_N	ProSiteProfiles	Ribosomal protein S5, N-terminal
Ribosomal_S5_D2-typ_fold_subgr	Gene3D	Ribosomal protein S5 domain 2-type fold, subgroup
Ribosomal_S5_euk/arc	TIGRFAM	Ribosomal protein S5, eukaryotic/archaeal

GOSlim

20 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
enzyme binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
cellular protein modification process	Orthology	biological process
intracellular organelle part	Orthology	cellular component
cell adhesion molecule binding	Orthology	molecular function
positive regulation of catalytic activity	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
protein methylation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
fibroblast growth factor binding	Hs	molecular function
enzyme binding	Hs	molecular function
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
cadherin binding	Hs	molecular function
positive regulation of ubiquitin-protein transferase activity	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	402	1.82e-142
mRNA binding	Hs	molecular function	402	1.82e-142
structural constituent of ribosome	Hs	molecular function	402	1.82e-142
protein binding	Hs	molecular function	402	1.82e-142
nucleus	Hs	cellular component	402	1.82e-142
nucleoplasm	Hs	cellular component	402	1.82e-142
cytosol	Hs	cellular component	402	1.82e-142
ribosome	Hs	cellular component	402	1.82e-142
focal adhesion	Hs	cellular component	402	1.82e-142
small ribosomal subunit	Hs	cellular component	402	1.82e-142
membrane	Hs	cellular component	402	1.82e-142
fibroblast growth factor binding	Hs	molecular function	402	1.82e-142
enzyme binding	Hs	molecular function	402	1.82e-142
cytosolic small ribosomal subunit	Hs	cellular component	402	1.82e-142
intracellular ribonucleoprotein complex	Hs	cellular component	402	1.82e-142
cadherin binding	Hs	molecular function	402	1.82e-142
extracellular exosome	Hs	cellular component	402	1.82e-142

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
RNA binding	Pfam	molecular function	1.2E-31
structural constituent of ribosome	PANTHER	molecular function	1.1E-128
ribosome	PANTHER	cellular component	1.1E-128
translation	PANTHER	biological process	1.1E-128
small ribosomal subunit	TIGRFAM	cellular component	1.0E-94