Aniseed - Gene card

External Database Gene Card

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Gene collection 1 (N. Satoh)

3 results

citb028j21

Plate: R1CiGC31i12

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
EIF-4B	PANTHER	Eukaryotic translation initiation factor 4B
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	SMART	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

20 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Orthology	cellular component
translational initiation	Orthology	biological process
membrane	Blast	cellular component
nuclear body	Blast	cellular component
neuronal cell body	Orthology	cellular component
perinuclear region of cytoplasm	Blast	cellular component
nuclear-transcribed mRNA catabolic process	Orthology	biological process
regulation of gene expression	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
macromolecular complex	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
macromolecular complex binding	Orthology	molecular function
nucleoplasm part	Blast	cellular component
cell adhesion molecule binding	Blast	molecular function

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA poly(A) tail shortening	Hs	biological process
formation of translation preinitiation complex	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
translation initiation factor activity	Hs	molecular function
helicase activity	Hs	molecular function
protein binding	Hs	molecular function
cytosol	Hs	cellular component
polysome	Hs	cellular component
translation	Hs	biological process
translational initiation	Hs	biological process
regulation of translational initiation	Hs	biological process
eukaryotic translation initiation factor 4F complex	Hs	cellular component
dendrite	Hs	cellular component
RNA strand annealing activity	Hs	molecular function
RNA strand-exchange activity	Hs	molecular function
ribosomal small subunit binding	Hs	molecular function
neuronal cell body	Hs	cellular component
eukaryotic translation initiation factor 4F complex assembly	Hs	biological process

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	153	2.25e-40
RNA binding	Hs	molecular function	153	2.25e-40
mRNA binding	Hs	molecular function	54.3	1.17e-07
translation initiation factor activity	Hs	molecular function	153	2.25e-40
helicase activity	Hs	molecular function	153	2.25e-40
protein binding	Hs	molecular function	153	2.25e-40
nucleus	Hs	cellular component	54.3	1.17e-07
nucleoplasm	Hs	cellular component	54.3	1.17e-07
cytoplasm	Hs	cellular component	84.3	2.59e-18
cytosol	Hs	cellular component	153	2.25e-40
polysome	Hs	cellular component	153	2.25e-40
mRNA cleavage and polyadenylation specificity factor complex	Hs	cellular component	54.3	1.17e-07
translation factor activity, RNA binding	Hs	molecular function	84.3	2.59e-18
membrane	Hs	cellular component	84.3	2.59e-18
eukaryotic translation initiation factor 4F complex	Hs	cellular component	153	2.25e-40
nuclear body	Hs	cellular component	54.3	1.17e-07
dendrite	Hs	cellular component	153	2.25e-40
RNA strand annealing activity	Hs	molecular function	153	2.25e-40
RNA strand-exchange activity	Hs	molecular function	153	2.25e-40
ribosomal small subunit binding	Hs	molecular function	153	2.25e-40
neuronal cell body	Hs	cellular component	153	2.25e-40
cadherin binding	Hs	molecular function	84.3	2.59e-18
perinuclear region of cytoplasm	Hs	cellular component	84.3	2.59e-18
cleavage body	Hs	cellular component	54.3	1.17e-07

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	4.48E-19
RNA binding	PANTHER	molecular function	1.7E-115
translational initiation	PANTHER	biological process	1.7E-115
eukaryotic translation initiation factor 4F complex assembly	PANTHER	biological process	1.7E-115

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