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Gene Card

Best human hits

NPM1; NPM3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007171

Gene Model ID

KH2012:KH.C5.298

Location

KhC5:2829376..2836137

Transcript Models and Sequences

  KH2012:KH.C5.298.v1.A.nonSL3-1
KH2012:KH.C5.298.v1.A.SL1-1
KH2012:KH.C5.298.v2.A.SL2-2
KH2012:KH.C5.298.v3.A.nonSL3-2
KH2012:KH.C5.298.v3.A.SL1-2
KH2012:KH.C5.298.v4.A.SL2-1
KH2012:KH.C5.298.v5.A.nonSL3-1
KH2012:KH.C5.298.v5.A.SL1-1
KH2012:KH.C5.298.v6.A.nonSL3-2
KH2012:KH.C5.298.v6.A.SL1-2
KH2012:KH.C5.298.v7.A.SL2-1
KH2012:KH.C5.298.v8.A.SL2-2

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000021531
NCBI Reference Sequence XM_002122400.4
Collections

Gateway full ORF

2 results

cien78087

Plate: VES82_G14

cima865289

Plate: VES65_P16

Gene collection 1 (N. Satoh)

2 results

citb8p7

Plate: R1CiGC29n12

citb032l18

Plate: R1CiGC31j10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Nucleoplasmin_core_dom_sf SUPERFAMILY Nucleoplasmin core domain superfamily
Nucleoplasmin PANTHER Nucleoplasmin family
Nucleoplasmin_core_dom Pfam Nucleoplasmin core domain
NPM1_C_sf Gene3D Nucleophosmin, C-terminal domain superfamily

GOSlim

43 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
transcription coactivator activity Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
centrosome Orthology cellular component
microtubule organizing center Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
focal adhesion Orthology cellular component
DNA repair Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
intracellular protein transport Orthology biological process
signal transduction Orthology biological process
protein localization Orthology biological process
transcription factor binding Orthology molecular function
positive regulation of cell proliferation Orthology biological process
negative regulation of cell proliferation Orthology biological process
membrane Orthology cellular component
protein kinase binding Orthology molecular function
macromolecular complex Orthology cellular component
protein homodimerization activity Orthology molecular function
negative regulation of apoptotic process Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
unfolded protein binding Orthology molecular function
protein oligomerization Orthology biological process
transcription regulatory region DNA binding Orthology molecular function
enzyme regulator activity Orthology molecular function
protein kinase activity Orthology molecular function
organelle organization Orthology biological process
DNA binding Orthology molecular function
intracellular transport Orthology biological process
microtubule-based process Orthology biological process
protein localization to organelle Orthology biological process
macromolecular complex binding Orthology molecular function
positive regulation of gene expression Orthology biological process
transcription factor activity, sequence-specific DNA binding Orthology molecular function

GO (Orthology)

57 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
core promoter binding Hs molecular function
RNA polymerase II transcription coactivator activity Hs molecular function
nucleic acid binding Hs molecular function
transcription coactivator activity Hs molecular function
RNA binding Hs molecular function
protein kinase inhibitor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
centrosome Hs cellular component
microtubule organizing center Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
focal adhesion Hs cellular component
DNA repair Hs biological process
nucleosome assembly Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
intracellular protein transport Hs biological process
nucleocytoplasmic transport Hs biological process
centrosome cycle Hs biological process
signal transduction Hs biological process
cell aging Hs biological process
protein localization Hs biological process
transcription factor binding Hs molecular function
positive regulation of cell proliferation Hs biological process
negative regulation of cell proliferation Hs biological process
negative regulation of centrosome duplication Hs biological process
membrane Hs cellular component
viral process Hs biological process
protein kinase binding Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
Tat protein binding Hs molecular function
spindle pole centrosome Hs cellular component
macromolecular complex Hs cellular component
protein-DNA complex Hs cellular component
activating transcription factor binding Hs molecular function
CENP-A containing nucleosome assembly Hs biological process
cellular response to UV Hs biological process
ribosome assembly Hs biological process
histone binding Hs molecular function
protein homodimerization activity Hs molecular function
ribosomal large subunit binding Hs molecular function
ribosomal small subunit binding Hs molecular function
negative regulation of apoptotic process Hs biological process
positive regulation of translation Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
regulation of centriole replication Hs biological process
protein heterodimerization activity Hs molecular function
NF-kappaB binding Hs molecular function
unfolded protein binding Hs molecular function
positive regulation of NF-kappaB transcription factor activity Hs biological process
protein oligomerization Hs biological process
positive regulation of cell cycle G2/M phase transition Hs biological process

GO (Blast)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
core promoter binding Hs molecular function 59.3 6.36e-10
RNA polymerase II transcription coactivator activity Hs molecular function 59.3 6.36e-10
nucleic acid binding Hs molecular function 59.3 6.36e-10
transcription coactivator activity Hs molecular function 59.3 6.36e-10
RNA binding Hs molecular function 59.3 6.36e-10
protein kinase inhibitor activity Hs molecular function 59.3 6.36e-10
protein binding Hs molecular function 59.3 6.36e-10
nucleus Hs cellular component 59.3 6.36e-10
nucleoplasm Hs cellular component 59.3 6.36e-10
nucleolus Hs cellular component 59.3 6.36e-10
cytoplasm Hs cellular component 59.3 6.36e-10
centrosome Hs cellular component 59.3 6.36e-10
microtubule organizing center Hs cellular component 59.3 6.36e-10
cytosol Hs cellular component 59.3 6.36e-10
cytoskeleton Hs cellular component 59.3 6.36e-10
focal adhesion Hs cellular component 59.3 6.36e-10
transcription factor binding Hs molecular function 59.3 6.36e-10
actin cytoskeleton Hs cellular component 57.0 9.72e-10
membrane Hs cellular component 59.3 6.36e-10
protein kinase binding Hs molecular function 59.3 6.36e-10
intracellular ribonucleoprotein complex Hs cellular component 59.3 6.36e-10
Tat protein binding Hs molecular function 59.3 6.36e-10
spindle pole centrosome Hs cellular component 59.3 6.36e-10
macromolecular complex Hs cellular component 59.3 6.36e-10
protein-DNA complex Hs cellular component 59.3 6.36e-10
activating transcription factor binding Hs molecular function 59.3 6.36e-10
histone binding Hs molecular function 59.3 6.36e-10
protein homodimerization activity Hs molecular function 59.3 6.36e-10
ribosomal large subunit binding Hs molecular function 59.3 6.36e-10
ribosomal small subunit binding Hs molecular function 59.3 6.36e-10
protein heterodimerization activity Hs molecular function 59.3 6.36e-10
NF-kappaB binding Hs molecular function 59.3 6.36e-10
unfolded protein binding Hs molecular function 59.3 6.36e-10

GO (InterProScan)

No result

GO Term Analysis Type e-value

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