Aniseed - Gene card

Gene Card

Best human hits

PRDM1; ZNF649; ZSCAN5B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007226

Gene Model ID

KH2012:KH.C5.350

Location

KhC5:3762124..3766600

Transcript Models and Sequences

KH2012:KH.C5.350.v1.B.ND1-1
KH2012:KH.C5.350.v2.A.ND1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000021870
NCBI Reference Sequence	XM_018811882.1

Collections

Gene collection 1 (N. Satoh)

1 result

cinc032f17

Plate: R1CiGC45h13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	SMART	Zinc finger C2H2-type

GOSlim

18 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
extracellular space	Blast	cellular component
intracellular	Blast	cellular component
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
transferase activity	Blast	molecular function
sequence-specific DNA binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
metabolic process	Blast	biological process
enzyme binding	Blast	molecular function
chromatin binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	81.6	1.82e-16
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	82.0	8.23e-17
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	81.6	1.82e-16
nucleic acid binding	Hs	molecular function	89.7	2.40e-19
DNA binding	Hs	molecular function	89.7	2.40e-19
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	89.7	2.40e-19
protein binding	Hs	molecular function	89.7	2.40e-19
extracellular space	Hs	cellular component	89.7	2.40e-19
intracellular	Hs	cellular component	89.7	2.40e-19
nucleus	Hs	cellular component	89.7	2.40e-19
nucleoplasm	Hs	cellular component	81.6	1.82e-16
cytoplasm	Hs	cellular component	81.6	1.82e-16
methyltransferase activity	Hs	molecular function	81.6	1.82e-16
transferase activity	Hs	molecular function	81.6	1.82e-16
histone deacetylase binding	Hs	molecular function	81.6	1.82e-16
sequence-specific DNA binding	Hs	molecular function	81.6	1.82e-16
transcription regulatory region DNA binding	Hs	molecular function	89.7	2.40e-19
metal ion binding	Hs	molecular function	89.7	2.40e-19
promoter-specific chromatin binding	Hs	molecular function	81.6	1.82e-16

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	7.1E-4